readthrough_protein_-p85-

Euk-Vir

Japanese_iris_necrotic_ring_virus

readthrough_protein_-p85-__NP_038454__Japanese_iris_necrotic_ring_virus__77344

Identity

80.9 mean pLDDT

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 608-756

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	130.4	1.20e-37	89.9%	27.8%

D2 medium residues 3-60

PDB

D3 medium residues 81-189

PDB

Domain cluster: rep: replicase__YP_009037607__Moroccan_pepper_virus__208086__D159-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08500.17 best	Tombus_P33	42.0	1.70e-10	89.0%	61.5%

D4 medium residues 191-232

PDB

Domain cluster: representative

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3740400	148.1.3.19 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3	0.63	39.0	2.87e-01	97.6%	25.7%
3347305	101.1.1.30 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4	0.61	40.0	2.81e-01	71.4%	29.7%
3882189	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	45.0	4.29e-01	88.1%	100.0%

D5 medium residues 242-244_246-331_391-405

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	51.8	8.30e-14	63.5%	13.4%

D6 medium residues 332-390_406-439_482-535

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	90.7	1.30e-25	65.3%	22.4%
PF00998.29	RdRP_3	72.1	5.70e-20	37.4%	11.3%

D7 medium residues 440-481_536-605

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	94.6	8.30e-27	64.3%	15.4%
PF00998.29	RdRP_3	68.5	6.90e-19	41.1%	9.5%