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readthrough_protein

Euk-Vir

Tobacco_vein_distorting_virus

readthrough_protein__YP_001931932__Tobacco_vein_distorting_virus__192203

Identity

Accession:
YP_001931932 ↗
Protein ID:
readthrough_protein
Kingdom:
euk

Quality

63.7 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-204
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00894.25 best Luteo_coat 171.6 1.20e-50 99.3% 100.0%
D2 medium residues 231-256_299-325_350-358_360-383
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 48.4 8.90e-13 40.7% 6.5%
PF01690.22 PLRV_ORF5 36.7 3.10e-09 37.2% 5.5%
PF01690.22 PLRV_ORF5 33.7 2.50e-08 30.2% 4.8%
D3 medium residues 257-298_326-349_384-436_452-463
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 99.2 3.40e-28 46.6% 10.7%
PF01690.22 PLRV_ORF5 58.6 6.90e-16 33.6% 8.2%
PF01690.22 PLRV_ORF5 34.6 1.30e-08 20.6% 5.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.59 34.0 3.45e-01 90.8% 55.0%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 41.0 4.39e-01 89.3% 87.5%
2q3zA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 4.13e-01 74.8% 88.5%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 4.21e-01 82.4% 84.8%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.52 35.0 3.90e-01 89.3% 84.8%
6gmhC01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 36.0 3.62e-01 72.5% 86.3%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.51 25.0 2.98e-01 70.2% 67.9%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 30.0 3.69e-01 78.6% 96.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.93e-01 81.7% 88.1%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.65e-01 71.8% 95.0%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.94e-01 83.2% 85.0%
5euvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.72e-01 82.4% 89.4%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.86e-01 80.9% 89.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936526 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.61 45.0 4.72e-01 89.3% 85.7%
3894737 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.60 43.0 4.45e-01 88.5% 79.0%
169039 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.59 34.0 3.45e-01 90.8% 55.0%
3505674 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.57 41.0 4.49e-01 84.0% 92.4%
140559 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.57 41.0 4.40e-01 89.3% 87.5%
5043857 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 4.09e-01 81.7% 80.0%
5007992 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.54 40.0 4.10e-01 80.2% 83.8%
3271205 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.92e-01 80.2% 87.0%
3841027 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.53 42.0 3.97e-01 84.0% 92.9%
4970000 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.30e-01 83.2% 61.7%
5013082 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 39.0 3.91e-01 80.2% 83.7%
4968130 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.51 35.0 3.82e-01 81.7% 86.7%
3178618 12.3.1.45 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2264_C 0.51 41.0 3.15e-01 86.3% 87.4%
4445683 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.82e-01 88.5% 78.5%
3985408 11.1.1.123 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Invasin_D3 0.50 33.0 3.61e-01 79.4% 82.9%
1885903 11.1.1.273 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro2_C5 0.50 32.0 3.66e-01 82.4% 85.7%
3977244 12.1.1.96 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › TraK_C 0.50 31.0 3.39e-01 70.2% 75.2%