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rep

Euk-Vir

Po-Circo-like_virus_21

rep__YP_009109615__Po-Circo-like_virus_21__1105383

Identity

Accession:: YP_009109615 ↗
Protein ID:: rep
Kingdom:: euk

Quality

84.4 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Rohanvirales› Kirkoviridae› Aglavirus› Po-Circo-like_virus_21

TaxID: 1105383

Cluster

View cluster (107 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-101

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	69.7	2.90e-19	89.7%	100.0%

D2 high residues 110-158

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wgmA01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.66	42.0	3.56e-01	73.5%	39.0%
1jr8A00	1.20.120.310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain	0.65	57.0	4.49e-01	100.0%	98.1%
2oh3A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.65	45.0	3.25e-01	73.5%	91.0%
8igrI01	2.40.270.10	Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6	0.63	38.0	2.61e-01	71.4%	16.5%
2js5A00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.63	43.0	3.85e-01	77.6%	50.7%
3ttvA02	1.20.1370.20	Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain	0.61	45.0	3.68e-01	91.8%	40.4%
7p5hB03	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.58	42.0	3.55e-01	79.6%	69.7%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.57	39.0	3.69e-01	75.5%	59.0%
1dt9A01	3.30.960.10	Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1	0.52	44.0	3.52e-01	100.0%	83.8%
3p0hB02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	40.0	2.55e-01	93.9%	58.8%
4ioeA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.51	35.0	3.05e-01	75.5%	77.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3837930	101.1.1.347 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase	0.61	49.0	4.84e-01	100.0%	87.3%
3496789	5054.1.1.17 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8	0.60	50.0	3.24e-01	98.0%	54.9%
3348850	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	45.0	3.93e-01	100.0%	92.5%
3733319	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	41.0	3.30e-01	100.0%	92.2%

D3 high residues 166-304

PDB

Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	27.6	4.90e-06	68.3%	99.1%