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repeat_element_protein-b11
Euk-VirIchnoviriform_fugitivi
repeat_element_protein-b11__YP_001031230__Ichnoviriform_fugitivi__265522
Identity
- Accession:
- YP_001031230 ↗
- Protein ID:
- repeat_element_protein-b11
- Kingdom:
- euk
Quality
72.8
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 73-153_190-215
Domain cluster:
rep: repeat_element_protein-d11.2__YP_001031339__Ichnoviriform_fugitivi__265522__D56-142
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 76.2 | 3.60e-21 | 75.7% | 38.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.64 | 35.0 | 3.59e-01 | 89.7% | 53.9% |
| 2c47A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 32.0 | 3.77e-01 | 93.5% | 76.7% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.58 | 31.0 | 2.54e-01 | 95.3% | 26.6% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 26.0 | 3.45e-01 | 88.8% | 89.6% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.54 | 27.0 | 3.37e-01 | 89.7% | 85.2% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.54 | 38.0 | 4.06e-01 | 97.2% | 84.2% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 46.0 | 3.93e-01 | 100.0% | 92.3% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 3.58e-01 | 99.1% | 76.9% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 27.0 | 3.44e-01 | 88.8% | 98.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3832176 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.64 | 34.0 | 4.06e-01 | 90.7% | 78.6% |
| 3223830 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 26.0 | 3.59e-01 | 86.0% | 78.0% |
| 3824022 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.61 | 35.0 | 3.62e-01 | 92.5% | 59.0% |
| 3402509 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.60 | 41.0 | 4.49e-01 | 99.1% | 87.1% |
| 3374414 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.60 | 35.0 | 3.59e-01 | 92.5% | 58.7% |
| 3605369 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 28.0 | 3.70e-01 | 93.5% | 96.4% |
| 3287567 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.52 | 31.0 | 3.32e-01 | 98.1% | 67.8% |
| 4018347 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 29.0 | 3.02e-01 | 90.7% | 56.8% |
| 3257563 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.51 | 27.0 | 2.82e-01 | 86.9% | 53.7% |
| 4123449 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.51 | 33.0 | 3.59e-01 | 93.5% | 82.4% |
| 5018083 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.01e-01 | 89.7% | 43.3% |
D2
medium
residues 154-189_216-236