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repeat_element_protein-c7.1
Euk-VirIchnoviriform_fugitivi
repeat_element_protein-c7.1__YP_001031283__Ichnoviriform_fugitivi__265522
Identity
- Accession:
- YP_001031283 ↗
- Protein ID:
- repeat_element_protein-c7.1
- Kingdom:
- euk
Quality
69.0
mean pLDDT
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-272
Domain cluster:
rep: repeat_element_protein-d2.2__YP_001031309__Ichnoviriform_fugitivi__265522__D94-230
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 193.6 | 3.80e-57 | 90.1% | 70.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.62 | 26.0 | 3.18e-01 | 96.3% | 57.5% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 27.0 | 3.20e-01 | 86.3% | 60.6% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 23.0 | 3.42e-01 | 84.5% | 88.1% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.55 | 26.0 | 3.03e-01 | 95.0% | 60.0% |
| 1r0vA02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.52 | 25.0 | 3.32e-01 | 82.6% | 90.7% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.52 | 28.0 | 3.64e-01 | 96.3% | 95.5% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 23.0 | 3.00e-01 | 95.7% | 72.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974395 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.63 | 32.0 | 3.90e-01 | 94.4% | 75.0% |
| 4626020 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.62 | 29.0 | 4.02e-01 | 85.1% | 92.0% |
| 3652106 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.58 | 27.0 | 3.28e-01 | 96.9% | 65.4% |
| 3430385 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.52 | 28.0 | 3.14e-01 | 100.0% | 64.8% |
| 3376780 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.50 | 27.0 | 3.62e-01 | 93.8% | 100.0% |