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repeat_element_protein-d11.1
Euk-VirIchnoviriform_fugitivi
repeat_element_protein-d11.1__YP_001031338__Ichnoviriform_fugitivi__265522
Identity
- Accession:
- YP_001031338 ↗
- Protein ID:
- repeat_element_protein-d11.1
- Kingdom:
- euk
Quality
80.7
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-141
Domain cluster:
rep: repeat_element_protein-d2.2__YP_001031309__Ichnoviriform_fugitivi__265522__D94-230
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 167.9 | 2.90e-49 | 100.0% | 62.7% |
D2
medium
residues 142-199
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0aA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.68 | 49.0 | 4.44e-01 | 82.8% | 55.6% |
| 5h3hB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 51.0 | 3.38e-01 | 100.0% | 33.5% |
| 3k2oB02 | 1.20.1280.270 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 42.0 | 4.59e-01 | 82.8% | 95.6% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 42.0 | 3.23e-01 | 75.9% | 50.4% |
| 1iv8A03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.59 | 39.0 | 3.57e-01 | 94.8% | 48.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.57 | 42.0 | 3.55e-01 | 82.8% | 46.0% |
| 3ajmA01 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.52 | 37.0 | 3.79e-01 | 81.0% | 94.8% |
| 1wdyA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.51 | 38.0 | 2.48e-01 | 81.0% | 23.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4477905 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.72 | 51.0 | 3.48e-01 | 100.0% | 22.1% |
| 2486293 | 8001.1.1.1 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C | 0.52 | 36.0 | 3.48e-01 | 75.9% | 67.6% |
| 4826248 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.50 | 38.0 | 3.43e-01 | 87.9% | 57.1% |