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repeat_element_protein-d11.2

Euk-Vir

Ichnoviriform_fugitivi

repeat_element_protein-d11.2__YP_001031339__Ichnoviriform_fugitivi__265522

Identity

Accession:
YP_001031339 ↗
Protein ID:
repeat_element_protein-d11.2
Kingdom:
euk

Quality

67.8 mean pLDDT

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 56-142
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 106.0 2.50e-30 100.0% 42.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.27e-01 92.0% 70.4%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 3.18e-01 88.5% 68.8%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.54 38.0 2.98e-01 73.6% 70.7%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.89e-01 86.2% 64.4%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.53 39.0 3.80e-01 79.3% 71.6%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.98e-01 95.4% 53.6%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.83e-01 86.2% 58.0%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.12e-01 95.4% 65.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 32.0 3.32e-01 79.3% 64.3%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 40.0 3.44e-01 83.9% 72.7%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.99e-01 89.7% 69.0%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 44.0 3.27e-01 98.9% 73.2%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.84e-01 86.2% 72.3%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.03e-01 100.0% 54.3%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.76e-01 82.8% 84.9%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.97e-01 100.0% 52.3%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 35.0 3.16e-01 73.6% 96.8%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 44.0 3.14e-01 100.0% 71.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4626020 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.61 39.0 4.21e-01 80.5% 76.0%
3832176 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 33.0 3.64e-01 74.7% 68.6%
3594520 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.56 47.0 3.17e-01 90.8% 57.2%
None — 0.56 46.0 3.15e-01 90.8% 58.1%
3180372 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 43.0 2.95e-01 86.2% 58.2%
3684661 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.55 34.0 2.94e-01 73.6% 37.9%
3258639 7579.1.1.13 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.55 42.0 2.99e-01 81.6% 58.0%
2603057 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.54 46.0 3.20e-01 93.1% 62.7%
3413759 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 43.0 2.90e-01 88.5% 46.0%
3703231 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 38.0 3.08e-01 74.7% 64.8%
4944792 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.53 46.0 3.21e-01 94.3% 67.4%
3970610 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.53 42.0 2.96e-01 86.2% 60.0%
3631575 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 42.0 2.84e-01 87.4% 77.7%
4986455 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 40.0 2.85e-01 85.1% 70.1%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 38.0 3.12e-01 77.0% 64.8%
3601992 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 41.0 2.86e-01 86.2% 63.4%
3856579 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 41.0 2.82e-01 87.4% 50.2%
3439604 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 44.0 3.15e-01 94.3% 69.8%
3500932 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 42.0 2.94e-01 88.5% 63.8%
None — 0.51 42.0 2.93e-01 90.8% 55.0%
3257391 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 42.0 3.05e-01 90.8% 63.5%
3924404 7579.1.1.102 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Hydrolase_4 0.51 42.0 2.91e-01 92.0% 52.7%
3406671 59.1.1.11 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.51 37.0 3.05e-01 75.9% 71.9%
None — 0.51 41.0 2.88e-01 89.7% 55.0%
3763073 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.51 45.0 2.83e-01 100.0% 66.0%
None — 0.50 44.0 3.18e-01 98.9% 66.2%
4946334 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.50 42.0 3.04e-01 94.3% 64.4%
4085178 7579.1.1.32 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FrsA-like 0.50 40.0 2.60e-01 87.4% 44.6%
D2 medium residues 143-244
PDB
Domain cluster: rep: repeat_element_protein-d6.3__YP_001031322__Ichnoviriform_fugitivi__265522__D141-243
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 78.4 7.30e-22 66.7% 33.3%