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repeat_element_protein-d11.3

Euk-Vir

Ichnoviriform_fugitivi

repeat_element_protein-d11.3__YP_001031340__Ichnoviriform_fugitivi__265522

Identity

Accession:
YP_001031340 ↗
Protein ID:
repeat_element_protein-d11.3
Kingdom:
euk

Quality

70.1 mean pLDDT

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-97
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 55.8 6.20e-15 94.4% 30.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.59 41.0 3.05e-01 73.6% 93.5%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 41.0 2.65e-01 76.4% 53.6%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.56 37.0 3.92e-01 70.8% 78.7%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.56 39.0 3.22e-01 75.0% 62.9%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.62e-01 87.5% 60.5%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 3.03e-01 90.3% 54.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.41e-01 76.4% 29.9%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.07e-01 100.0% 41.2%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 3.10e-01 100.0% 54.3%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.18e-01 100.0% 58.9%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.11e-01 100.0% 59.8%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.53 36.0 2.65e-01 70.8% 35.8%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.64e-01 81.9% 76.5%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.51 41.0 3.29e-01 100.0% 92.8%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.55e-01 90.3% 67.9%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 2.97e-01 73.6% 54.2%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 37.0 2.86e-01 81.9% 44.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.17e-01 97.2% 39.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3784861 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.68 46.0 3.80e-01 70.8% 52.3%
2603057 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.62 44.0 2.89e-01 73.6% 63.4%
None — 0.59 44.0 2.88e-01 79.2% 73.7%
3626370 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.58 46.0 3.24e-01 86.1% 56.5%
4587247 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 39.0 3.67e-01 70.8% 80.0%
3399905 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.56 49.0 3.19e-01 97.2% 48.4%
3961641 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 43.0 2.81e-01 84.7% 71.2%
3718555 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.54 42.0 2.78e-01 86.1% 28.2%
3722822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 2.55e-01 81.9% 14.7%
3290820 7579.1.1.94 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Peptidase_S15 0.53 45.0 2.95e-01 91.7% 46.6%
4498130 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.52 44.0 3.04e-01 100.0% 80.3%
3940033 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 43.0 2.80e-01 91.7% 49.8%
D2 medium residues 98-137_149-229
PDB
Domain cluster: rep: repeat_element_protein-d6.3__YP_001031322__Ichnoviriform_fugitivi__265522__D141-243
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 100.8 1.00e-28 73.6% 48.3%