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repeat_element_protein-d6.3
Euk-VirIchnoviriform_fugitivi
repeat_element_protein-d6.3__YP_001031322__Ichnoviriform_fugitivi__265522
Identity
- Accession:
- YP_001031322 ↗
- Protein ID:
- repeat_element_protein-d6.3
- Kingdom:
- euk
Quality
82.3
mean pLDDT
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 73-140
Domain cluster:
rep: repeat_element_protein-d11.2__YP_001031339__Ichnoviriform_fugitivi__265522__D56-142
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 100.1 | 1.60e-28 | 100.0% | 33.8% |
D2
medium
residues 141-243
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 79.7 | 2.90e-22 | 72.8% | 35.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.67 | 37.0 | 4.32e-01 | 87.4% | 75.7% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.56 | 33.0 | 3.60e-01 | 88.3% | 69.8% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 30.0 | 3.53e-01 | 75.7% | 74.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3487880 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.69 | 37.0 | 4.55e-01 | 86.4% | 83.1% |
| 5058952 | 138.1.1.38 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › MutL_C | 0.67 | 30.0 | 3.83e-01 | 71.8% | 71.7% |
| 4242465 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.64 | 36.0 | 3.78e-01 | 87.4% | 60.0% |
| 3998221 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.64 | 26.0 | 2.33e-01 | 77.7% | 26.9% |
| 4060776 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.52 | 40.0 | 3.01e-01 | 83.5% | 85.1% |