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repeat_element_protein-d7.2
Euk-VirIchnoviriform_fugitivi
repeat_element_protein-d7.2__YP_001031325__Ichnoviriform_fugitivi__265522
Identity
- Accession:
- YP_001031325 ↗
- Protein ID:
- repeat_element_protein-d7.2
- Kingdom:
- euk
Quality
79.9
mean pLDDT
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-102
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 94.5 | 8.40e-27 | 100.0% | 36.8% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.63 | 35.0 | 4.34e-01 | 81.1% | 89.1% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 35.0 | 2.98e-01 | 87.8% | 33.1% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 35.0 | 3.40e-01 | 100.0% | 49.4% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 40.0 | 2.98e-01 | 85.1% | 26.7% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.59 | 51.0 | 3.59e-01 | 100.0% | 32.5% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 38.0 | 3.32e-01 | 87.8% | 44.5% |
| 3h9wA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 36.0 | 3.15e-01 | 87.8% | 45.0% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 36.0 | 2.93e-01 | 87.8% | 35.5% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.51e-01 | 77.0% | 99.0% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.53 | 46.0 | 3.61e-01 | 97.3% | 51.6% |
| 2ipiA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 45.0 | 3.25e-01 | 98.6% | 74.0% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.51 | 39.0 | 3.23e-01 | 86.5% | 99.3% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 30.0 | 2.60e-01 | 85.1% | 33.1% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.48e-01 | 87.8% | 73.5% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.51 | 40.0 | 2.95e-01 | 93.2% | 94.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4325808 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.67 | 38.0 | 3.47e-01 | 75.7% | 43.2% |
| 4027366 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 57.0 | 3.58e-01 | 98.6% | 55.6% |
| 4523828 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.63 | 44.0 | 3.62e-01 | 74.3% | 39.3% |
| 3735309 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 36.0 | 3.42e-01 | 85.1% | 48.9% |
| 3472642 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.60 | 42.0 | 2.66e-01 | 74.3% | 65.7% |
| 4988350 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.59 | 34.0 | 3.04e-01 | 83.8% | 38.2% |
| 3041218 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.59 | 38.0 | 2.91e-01 | 87.8% | 29.5% |
| 3255683 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.58 | 35.0 | 2.94e-01 | 85.1% | 32.6% |
| 4424877 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.57 | 38.0 | 2.90e-01 | 85.1% | 27.9% |
| 3614175 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 32.0 | 2.83e-01 | 87.8% | 37.3% |
| 4973377 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.56 | 40.0 | 3.06e-01 | 74.3% | 59.4% |
| 3442564 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.56 | 32.0 | 3.62e-01 | 93.2% | 74.5% |
| 3924998 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 40.0 | 2.69e-01 | 81.1% | 75.5% |
| 4977455 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 43.0 | 3.01e-01 | 89.2% | 50.9% |
| 3275614 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.54 | 42.0 | 2.38e-01 | 83.8% | 37.3% |
| 4236690 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.54 | 26.0 | 2.67e-01 | 78.4% | 41.9% |
| 4002132 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 40.0 | 2.69e-01 | 81.1% | 64.6% |
| 4486742 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.54 | 44.0 | 3.55e-01 | 90.5% | 67.6% |
| 4951792 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.53 | 44.0 | 3.18e-01 | 100.0% | 64.3% |
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.53 | 42.0 | 3.46e-01 | 89.2% | 69.3% |
| 4002747 | 109.4.1.1812 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc | 0.52 | 45.0 | 2.46e-01 | 100.0% | 11.6% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.52 | 41.0 | 3.48e-01 | 86.5% | 91.5% |
| 4067945 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.52 | 36.0 | 3.30e-01 | 97.3% | 52.4% |
| 3966741 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 43.0 | 2.90e-01 | 100.0% | 38.5% |
| 3700429 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.51 | 34.0 | 2.83e-01 | 85.1% | 36.4% |
| 4028937 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.50 | 42.0 | 2.50e-01 | 98.6% | 17.6% |
| 1888906 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.50 | 40.0 | 2.60e-01 | 93.2% | 42.5% |
D2
medium
residues 135-242
Domain cluster:
rep: repeat_element_protein-d6.3__YP_001031322__Ichnoviriform_fugitivi__265522__D141-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12132.14 best | DUF3587 | 76.5 | 2.80e-21 | 71.3% | 35.8% |