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repeat_element_protein-d7.3

Euk-Vir

Ichnoviriform_fugitivi

repeat_element_protein-d7.3__YP_001031326__Ichnoviriform_fugitivi__265522

Identity

Accession:
YP_001031326 ↗
Protein ID:
repeat_element_protein-d7.3
Kingdom:
euk

Quality

79.1 mean pLDDT

Cluster

View cluster (27 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 70-131
PDB
Domain cluster: rep: repeat_element_protein-d11.2__YP_001031339__Ichnoviriform_fugitivi__265522__D56-142
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 84.0 1.50e-23 100.0% 30.3%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 37.0 3.86e-01 74.2% 61.4%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.63 44.0 3.72e-01 100.0% 43.4%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.60 42.0 3.47e-01 100.0% 40.0%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 52.0 3.41e-01 100.0% 48.2%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.96e-01 90.3% 83.3%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.16e-01 98.4% 41.8%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 50.0 3.35e-01 100.0% 43.8%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.20e-01 98.4% 50.2%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.56 39.0 3.36e-01 75.8% 64.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.56 43.0 3.18e-01 87.1% 69.1%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.06e-01 100.0% 35.6%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.54 36.0 3.21e-01 90.3% 43.6%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.66e-01 83.9% 74.5%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.09e-01 100.0% 47.0%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 2.93e-01 98.4% 60.1%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.46e-01 91.9% 56.0%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 36.0 3.12e-01 90.3% 43.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.66e-01 88.7% 79.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 45.0 4.16e-01 100.0% 84.3%
4x00A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.00e-01 100.0% 39.6%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 2.82e-01 100.0% 33.3%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 45.0 3.99e-01 100.0% 68.4%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.94e-01 100.0% 39.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 2.90e-01 88.7% 34.6%
4rncA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.92e-01 100.0% 38.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.51 37.0 3.01e-01 87.1% 39.0%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.50 39.0 3.07e-01 88.7% 71.7%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 41.0 3.33e-01 91.9% 93.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.50 37.0 3.86e-01 100.0% 96.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.70 39.0 2.41e-01 85.5% 9.4%
4025311 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 40.0 4.36e-01 82.3% 74.0%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 44.0 4.37e-01 90.3% 64.6%
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.30e-01 90.3% 78.0%
4944756 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.62 47.0 4.85e-01 100.0% 85.0%
3890321 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.62 43.0 3.24e-01 72.6% 99.3%
5059491 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 46.0 3.21e-01 88.7% 25.5%
3596328 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 48.0 3.53e-01 90.3% 54.7%
3737863 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.58 39.0 3.39e-01 91.9% 41.9%
3669824 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.58 40.0 4.18e-01 100.0% 80.0%
3258639 7579.1.1.13 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.58 50.0 3.35e-01 98.4% 60.0%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.58 33.0 3.15e-01 83.9% 45.3%
1868077 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.57 50.0 3.35e-01 100.0% 43.8%
3500932 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.56 51.0 3.24e-01 100.0% 44.5%
3399905 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.56 48.0 3.07e-01 98.4% 44.1%
3257563 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.55 44.0 3.85e-01 88.7% 72.6%
3430385 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.55 42.0 3.42e-01 85.5% 56.8%
3677429 1.1.7.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin_2 0.54 38.0 3.40e-01 98.4% 49.5%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.54 37.0 3.79e-01 88.7% 73.3%
3399103 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.54 46.0 3.00e-01 98.4% 47.8%
4019882 7579.1.1.99 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4, Abhydrolase_6 0.54 45.0 2.91e-01 96.8% 42.7%
135514 7579.1.1.47 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › BD-FAE 0.52 44.0 2.94e-01 100.0% 39.3%
647 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 36.0 2.90e-01 88.7% 34.6%
3544243 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.60e-01 93.5% 97.1%
4929364 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.51 31.0 3.09e-01 83.9% 56.9%
3284886 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.50 42.0 2.88e-01 100.0% 42.5%
5067503 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.50 43.0 3.45e-01 96.8% 96.0%
D2 medium residues 132-153_166-240
PDB
Domain cluster: rep: repeat_element_protein-d2.2__YP_001031309__Ichnoviriform_fugitivi__265522__D94-230
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12132.14 best DUF3587 67.7 1.40e-18 70.1% 37.3%