replicase_P2

Euk-Vir

Blueberry_shock_virus

replicase_P2__YP_008519305__Blueberry_shock_virus__747056

Identity

67.9 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Blueberry_shock_virus

TaxID: 747056

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 255-348_658-738

PDB

Domain cluster: rep: unnamed_protein_product__YP_009551615__Apple_necrotic_mosaic_virus__1779339__D279-324_677-773

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	38.6	8.90e-10	45.7%	17.7%
PF00978.27	RdRP_2	29.1	6.90e-07	30.3%	12.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mhyG02	1.20.1280.30	Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2	0.58	23.0	3.42e-01	88.0%	84.9%
1t07A00	1.10.3880.10	Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX	0.57	18.0	2.61e-01	84.6%	58.0%
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	23.0	3.27e-01	85.1%	87.5%
3g0tA02	6.10.120.10	Special › Helix non-globular › 434 Repressor (Amino-terminal Domain) › Bacterial aspartate aminotransferase, helical domain	0.54	18.0	2.77e-01	81.7%	70.0%
1gteA02	1.10.1060.10	Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › Alpha-helical ferredoxin	0.53	34.0	3.54e-01	93.1%	68.8%
3t8qB01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.51	24.0	2.90e-01	93.1%	65.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3957449	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.53	25.0	3.16e-01	88.0%	74.0%
3504270	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.53	38.0	3.07e-01	72.0%	89.9%
4442882	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.51	24.0	3.25e-01	88.6%	84.4%
4116078	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.51	24.0	3.41e-01	88.0%	98.7%

D2 medium residues 349-387_515-584

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009104368__Lilac_leaf_chlorosis_virus__722755__D366-393_450-485_578-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	86.8	2.10e-24	65.1%	15.9%

D3 medium residues 388-478

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	77.1	1.80e-21	98.9%	20.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4187036	306.7.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain	0.67	37.0	3.45e-01	100.0%	42.7%
3250871	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.60	52.0	4.48e-01	98.9%	74.7%
3585180	109.4.1.1316 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C	0.54	42.0	2.57e-01	85.7%	21.4%
3182078	109.4.1.681 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2	0.52	41.0	2.71e-01	87.9%	36.8%
3518234	304.47.1.0 ↗	a+b two layers › Alpha-beta plaits › SEA domain › SEA domain	0.52	29.0	2.65e-01	98.9%	38.3%
4030294	7533.1.1.0 ↗	a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2	0.51	35.0	2.80e-01	71.4%	45.0%
3687677	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	39.0	2.53e-01	84.6%	58.5%

D4 medium residues 479-514_585-657

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	65.0	8.60e-18	67.9%	14.3%