replicase

Euk-Vir

Soybean_yellow_mottle_mosaic_virus

replicase__YP_002333476__Soybean_yellow_mottle_mosaic_virus__578361

Identity

77.0 mean pLDDT

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Gammacarmovirus› Soybean_yellow_mottle_mosaic_virus

TaxID: 578361

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 100-157

PDB

Domain cluster: rep: p27__YP_010087347__Jasmine_virus_H__1960887__D118-186

D2 medium residues 236-326_367-394_496-514

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	50.7	1.80e-13	56.5%	15.6%
PF00998.29	RdRP_3	27.2	2.40e-06	24.6%	5.8%

D3 medium residues 327-366_395-422_476-495

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	27.0	2.60e-06	46.6%	8.0%
PF00998.29	RdRP_3	30.4	2.60e-07	42.0%	6.6%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hqyA02	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	45.0	3.70e-01	100.0%	81.0%
3ka7A02	3.90.660.50	Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 ›	0.51	37.0	2.88e-01	86.4%	33.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4988092	601.29.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like	0.52	38.0	3.85e-01	77.3%	85.9%
5041450	101.1.2.673 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N	0.50	37.0	3.65e-01	88.6%	72.6%

D4 medium residues 423-475_515-597

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	122.8	2.40e-35	62.5%	17.7%
PF00998.29	RdRP_3	90.5	1.50e-25	39.0%	10.9%

D5 medium residues 598-746

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	95.8	3.70e-27	87.9%	26.8%