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replicase
Euk-VirMoroccan_pepper_virus
replicase__YP_009037607__Moroccan_pepper_virus__208086
Identity
- Accession:
- YP_009037607 ↗
- Protein ID:
- replicase
- Kingdom:
- euk
Quality
65.3
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 159-283
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08500.17 best | Tombus_P33 | 119.1 | 2.60e-34 | 96.8% | 77.0% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.62 | 42.0 | 4.72e-01 | 94.4% | 90.7% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 36.0 | 4.28e-01 | 90.4% | 89.7% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 27.0 | 2.94e-01 | 93.6% | 51.5% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.56 | 50.0 | 4.08e-01 | 95.2% | 81.6% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 28.0 | 3.51e-01 | 72.8% | 81.7% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.54 | 40.0 | 3.90e-01 | 78.4% | 82.4% |
| 3sdbA03 | 1.10.10.1140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Glutamine-dependent NAD+ synthetase, C-terminal domain | 0.53 | 33.0 | 3.36e-01 | 94.4% | 61.8% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 33.0 | 3.44e-01 | 92.0% | 67.3% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 36.0 | 3.39e-01 | 84.8% | 60.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928310 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.65 | 43.0 | 4.95e-01 | 88.0% | 90.3% |
| 3812110 | 7088.1.1.1 ↗ | alpha arrays › GPI-anchored protein › GPI-anchored protein › GPI-anchored protein › SPARK | 0.62 | 42.0 | 4.78e-01 | 83.2% | 94.4% |
| 3185910 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.54 | 46.0 | 3.23e-01 | 92.0% | 40.8% |
D2
medium
residues 29-78
D3
medium
residues 79-156