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replicase
Euk-VirAphis_glycines_virus_2_Viruses.
replicase__YP_009179352__Aphis_glycines_virus_2_Viruses.__X
Identity
- Accession:
- YP_009179352 ↗
- Protein ID:
- replicase
- Kingdom:
- euk
Quality
67.6
mean pLDDT
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-82
Domain cluster:
representative
D2
medium
residues 99-112_203-276_293-321_386-433
Domain cluster:
representative
Pfam (2)
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 27.0 | 3.71e-01 | 73.3% | 100.0% |
| 2yv4A00 | 3.40.50.11030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain | 0.52 | 29.0 | 3.55e-01 | 84.2% | 86.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1699894 | 304.48.2.2 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm | 0.96 | 94.0 | 6.26e-01 | 100.0% | 62.6% |
| 3645762 | 1075.1.2.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › SYS1 (DEPRECATED) | 0.53 | 30.0 | 3.36e-01 | 88.5% | 69.2% |
| 3667321 | 621.1.1.12 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › SYS1 | 0.53 | 30.0 | 3.35e-01 | 88.5% | 69.2% |
D3
medium
residues 325-335_553-579_615-653
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22260.2 best | Permu_RdRp_thumb | 29.0 | 1.40e-06 | 46.8% | 23.3% |
D4
medium
residues 868-954