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replicase

Euk-Vir

Tomato_necrotic_streak_virus

replicase__YP_009508872__Tomato_necrotic_streak_virus__1637492

Identity

Accession:: YP_009508872 ↗
Protein ID:: replicase
Kingdom:: euk

Quality

71.5 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Tomato_necrotic_streak_virus

TaxID: 1637492

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 661-740

PDB

Domain cluster: rep: replication-associated_polyprotein_1a__YP_009165996__Privet_ringspot_virus__2169960__D691-782

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vkwA01	3.30.450.420	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.70	62.0	5.01e-01	100.0%	52.0%
2yweA02	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.60	45.0	4.28e-01	82.5%	95.0%
7nkdA01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.57	40.0	4.08e-01	81.2%	75.3%
3tiiA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.55	41.0	4.40e-01	80.0%	100.0%
2hh8A00	3.30.1810.10	Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like	0.54	41.0	3.49e-01	80.0%	76.4%
3kptA02	2.60.40.740	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	42.0	3.55e-01	86.3%	70.2%
2qkdA04	2.60.120.1040	Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain	0.50	36.0	3.23e-01	78.8%	78.7%
7xc8A01	2.40.40.10	Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain	0.50	36.0	3.31e-01	77.5%	99.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1323359	3590.1.1.0 ↗	a+b complex topology › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain › Tomato mosaic virus helicase N-terminal domain	0.71	57.0	4.69e-01	87.5%	49.3%
4946925	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.60	45.0	4.62e-01	80.0%	100.0%
3103203	1.1.7.35 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH	0.59	43.0	4.20e-01	78.8%	90.0%
4518161	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.59	46.0	4.28e-01	86.3%	92.4%
4200175	4261.1.1.0 ↗	a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like	0.53	35.0	3.97e-01	77.5%	94.8%
4493756	11.1.1.335 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N	0.52	36.0	3.50e-01	75.0%	68.4%
4120647	275.1.1.0 ↗	a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	0.52	36.0	3.69e-01	72.5%	78.7%
5009921	217.1.1.2 ↗	a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4	0.51	41.0	3.17e-01	93.8%	74.8%
4936913	323.1.1.1 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh	0.51	37.0	2.79e-01	81.2%	60.4%
3969578	3268.1.1.0 ↗	a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase	0.51	26.0	3.10e-01	73.8%	72.7%

D2 high residues 743-889

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	85.3	7.90e-24	85.7%	47.8%

D3 high residues 894-1041

PDB

Domain cluster: rep: methyltransferase-helicase__YP_009551567__Tea_plant_line_pattern_virus__2419940__D883-1037

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	64.2	2.30e-17	81.8%	41.7%

D4 medium residues 14-48

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4errB00	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	46.0	3.48e-01	91.4%	30.1%
7p5hB03	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.64	45.0	3.31e-01	80.0%	29.2%
3i9v104	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.63	46.0	3.25e-01	80.0%	28.2%
2oh3A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.62	48.0	3.19e-01	88.6%	51.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3381639	109.4.1.349 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIX1	0.63	54.0	2.93e-01	100.0%	24.3%

D5 medium residues 92-213_276-312

PDB

Domain cluster: rep: methyltransferase_helicase__YP_009104367__Lilac_leaf_chlorosis_virus__722755__D97-204_268-298

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	100.1	1.90e-28	79.2%	39.6%

D6 medium residues 214-275_528-545

PDB

Domain cluster: rep: 1a_protein__NP_049331__Peanut_stunt_virus__12313__D212-238_254-285

D7 medium residues 313-431_479-496

PDB