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replicase
Euk-VirMolossus_molossus_circovirus_3
replicase__YP_009551494__Molossus_molossus_circovirus_3__1959844
Identity
- Accession:
- YP_009551494 ↗
- Protein ID:
- replicase
- Kingdom:
- euk
Quality
87.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Circovirus›
Molossus_molossus_circovirus_3
TaxID: 1959844
Cluster
View cluster (107 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 154-268
Domain cluster:
rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 54.8 | 1.60e-14 | 75.6% | 98.1% |
D2
medium
residues 2-93
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 83.4 | 1.50e-23 | 88.0% | 97.6% |
D3
medium
residues 105-145
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 5.07e-01 | 100.0% | 86.2% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 4.49e-01 | 100.0% | 58.7% |
| 1yrtA03 | 1.10.150.920 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 48.0 | 4.61e-01 | 82.9% | 70.8% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 3.64e-01 | 100.0% | 31.2% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.45e-01 | 100.0% | 66.7% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 47.0 | 4.66e-01 | 90.2% | 82.2% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 4.15e-01 | 100.0% | 57.5% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 39.0 | 3.17e-01 | 73.2% | 32.9% |
| 1sv0D00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.54 | 42.0 | 3.65e-01 | 100.0% | 50.6% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.54 | 38.0 | 3.41e-01 | 78.0% | 52.5% |
| 2xuaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 37.0 | 2.46e-01 | 95.1% | 15.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945210 | 101.1.6.25 ↗ | alpha arrays › HTH › HTH › TrpR › DUF2857 | 0.77 | 65.0 | 6.60e-01 | 100.0% | 95.0% |
| 3945143 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 59.0 | 5.46e-01 | 100.0% | 70.9% |
| 4281782 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 62.0 | 5.14e-01 | 100.0% | 56.0% |
| 3783338 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 59.0 | 5.75e-01 | 97.6% | 88.9% |
| 3391053 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 57.0 | 5.57e-01 | 97.6% | 88.9% |
| 3981529 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.68 | 57.0 | 5.28e-01 | 100.0% | 87.3% |
| 3676147 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.68 | 54.0 | 4.59e-01 | 100.0% | 60.0% |
| 3971990 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.65 | 55.0 | 4.43e-01 | 100.0% | 58.8% |
| 4156355 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.64 | 50.0 | 3.55e-01 | 100.0% | 31.9% |
| 3353468 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.61 | 46.0 | 2.96e-01 | 85.4% | 25.6% |
| 4196007 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.51 | 33.0 | 2.95e-01 | 70.7% | 39.7% |