←Back to structures
replicase
Euk-VirMolossus_molossus_circovirus_4
replicase__YP_009551505__Molossus_molossus_circovirus_4__1959845
Identity
- Accession:
- YP_009551505 ↗
- Protein ID:
- replicase
- Kingdom:
- euk
Quality
85.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Circovirus›
Molossus_molossus_circovirus_4
TaxID: 1959845
Cluster
View cluster (107 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-270
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 55.3 | 1.20e-14 | 80.2% | 100.0% |
D2
medium
residues 3-97
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 64.5 | 1.20e-17 | 87.4% | 97.6% |
D3
medium
residues 106-146
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 59.0 | 5.58e-01 | 90.2% | 70.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.74 | 62.0 | 4.80e-01 | 100.0% | 51.5% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 56.0 | 4.62e-01 | 90.2% | 53.8% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.71 | 57.0 | 4.99e-01 | 100.0% | 64.8% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.71 | 58.0 | 5.03e-01 | 97.6% | 72.9% |
| 5cz2G00 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.67 | 54.0 | 5.43e-01 | 97.6% | 97.6% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 57.0 | 4.67e-01 | 100.0% | 61.8% |
| 1ef4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 48.0 | 4.55e-01 | 90.2% | 72.7% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 50.0 | 4.79e-01 | 90.2% | 92.0% |
| 2j4jF00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 45.0 | 2.93e-01 | 97.6% | 17.7% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 42.0 | 3.78e-01 | 100.0% | 66.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042123 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 72.0 | 5.86e-01 | 100.0% | 56.0% |
| 4061833 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.77 | 66.0 | 3.95e-01 | 97.6% | 13.7% |
| 3197445 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 61.0 | 5.53e-01 | 90.2% | 70.9% |
| 3932988 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 66.0 | 6.01e-01 | 100.0% | 74.5% |
| 4316691 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 58.0 | 5.16e-01 | 87.8% | 76.7% |
| 3280314 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.74 | 65.0 | 5.94e-01 | 100.0% | 74.5% |
| 3632013 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 58.0 | 5.52e-01 | 90.2% | 78.0% |
| 3936293 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.73 | 64.0 | 4.91e-01 | 100.0% | 60.0% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 61.0 | 5.57e-01 | 97.6% | 98.2% |
| 3302252 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.72 | 48.0 | 4.18e-01 | 70.7% | 44.6% |
| 3410877 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 63.0 | 5.27e-01 | 100.0% | 58.6% |
| 3590732 | 101.1.1.364 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 | 0.71 | 58.0 | 5.65e-01 | 97.6% | 84.4% |
| 4943227 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.70 | 56.0 | 5.51e-01 | 97.6% | 84.4% |
| 3168868 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 58.0 | 5.54e-01 | 97.6% | 82.0% |
| 3753093 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.68 | 54.0 | 4.69e-01 | 90.2% | 56.9% |
| 5033182 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.65 | 55.0 | 3.61e-01 | 100.0% | 33.5% |
| 4156355 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.61 | 47.0 | 3.35e-01 | 100.0% | 59.4% |