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replicase_protein

Euk-Vir

Cape_gooseberry_ilarvirus_1

replicase_protein__YP_009551515__Cape_gooseberry_ilarvirus_1__2116599

Identity

Accession:
YP_009551515 ↗
Protein ID:
replicase_protein
Kingdom:
euk

Quality

71.9 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Cape_gooseberry_ilarvirus_1

TaxID: 2116599

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 601-660
PDB
D2 high residues 679-792
PDB
Domain cluster: rep: replication-associated_polyprotein_1a__YP_009165996__Privet_ringspot_virus__2169960__D691-782
D3 high residues 794-943
PDB
Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13604.13 best AAA_30 28.0 2.40e-06 95.3% 69.6%
PF01443.25 Viral_helicase1 88.5 8.40e-25 87.3% 50.0%
D4 medium residues 62-117
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v4iB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.75 65.0 5.92e-01 100.0% 100.0%
4cgxA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.70 49.0 3.51e-01 73.2% 28.0%
3it4B01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.70 58.0 5.33e-01 100.0% 94.9%
3a04A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.66 51.0 4.04e-01 85.7% 50.0%
1z2lA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 49.0 3.20e-01 87.5% 76.7%
3gvxB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 55.0 4.44e-01 100.0% 93.8%
1sc6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 50.0 3.91e-01 92.9% 92.5%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 48.0 3.72e-01 85.7% 43.8%
3lyuA01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.62 44.0 3.57e-01 76.8% 71.4%
4ay7A00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.60 49.0 3.07e-01 96.4% 94.7%
1g6cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 51.0 3.44e-01 98.2% 93.8%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 45.0 3.61e-01 85.7% 56.1%
4ovxA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 50.0 3.29e-01 100.0% 98.9%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 43.0 3.38e-01 83.9% 50.0%
7lnpA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 46.0 2.94e-01 100.0% 94.6%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.57 43.0 3.70e-01 83.9% 72.9%
6tr3A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 45.0 2.91e-01 100.0% 97.6%
3olcX02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.56 45.0 3.88e-01 94.6% 82.7%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 48.0 3.69e-01 98.2% 72.4%
6k34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 2.86e-01 94.6% 77.7%
3bdiA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.21e-01 100.0% 87.4%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 49.0 4.35e-01 100.0% 75.9%
3gzaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 42.0 2.77e-01 100.0% 95.3%
4n40A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.53 43.0 3.83e-01 100.0% 84.4%
1hl8A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 44.0 2.76e-01 96.4% 28.4%
3olcX03 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.51 40.0 3.63e-01 94.6% 86.2%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.64e-01 85.7% 68.1%
4hwgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 40.0 2.86e-01 98.2% 94.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3340708 2002.1.1.11 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PK 0.69 59.0 4.08e-01 100.0% 91.2%
5065240 7539.1.1.1 ↗ a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.65 49.0 3.25e-01 82.1% 83.7%
3661068 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 54.0 3.59e-01 100.0% 69.6%
4189420 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.64 46.0 3.82e-01 78.6% 63.8%
3285231 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.64 47.0 4.13e-01 80.4% 78.8%
4938784 7539.1.1.1 ↗ a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.62 45.0 3.01e-01 78.6% 83.8%
4160379 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.60 45.0 3.77e-01 83.9% 63.8%
3959613 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 47.0 3.14e-01 92.9% 99.6%
145647 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.60 46.0 3.81e-01 83.9% 64.4%
4028682 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.60 45.0 3.70e-01 82.1% 59.0%
4189620 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 43.0 3.87e-01 78.6% 67.5%
4984919 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.59 45.0 3.40e-01 83.9% 43.4%
4984185 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.59 50.0 3.33e-01 100.0% 100.0%
5037410 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.58 47.0 3.24e-01 100.0% 99.6%
5032908 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.58 43.0 3.61e-01 83.9% 65.7%
3837950 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.57 45.0 4.02e-01 94.6% 86.7%
4975930 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.57 43.0 3.34e-01 83.9% 46.7%
5015426 2003.1.1.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored 0.57 42.0 2.87e-01 82.1% 52.3%
5045440 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.56 42.0 3.31e-01 82.1% 50.8%
5051445 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.56 43.0 3.34e-01 83.9% 50.0%
3768733 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 42.0 3.80e-01 83.9% 82.5%
4999970 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.55 43.0 3.27e-01 96.4% 35.6%
3255617 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 41.0 2.81e-01 85.7% 24.1%
4970770 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.54 44.0 3.29e-01 96.4% 37.0%
4953240 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.54 37.0 2.83e-01 96.4% 30.4%
3319065 7568.1.1.1 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.54 43.0 3.52e-01 92.9% 69.6%
4073009 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.51 37.0 3.42e-01 78.6% 72.0%
4994517 102.1.3.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › tRNA_NucTransf2 0.51 41.0 3.25e-01 96.4% 80.0%
5043419 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.51 35.0 3.29e-01 75.0% 72.0%
D5 medium residues 226-284_331-344
PDB
D6 medium residues 345-374_432-459_513-549
PDB
D7 medium residues 375-431
PDB
D8 medium residues 948-1096
PDB
Domain cluster: rep: methyltransferase-helicase__YP_009551567__Tea_plant_line_pattern_virus__2419940__D883-1037
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01443.25 best Viral_helicase1 53.5 4.10e-14 81.9% 46.1%