replication-associated_polyprotein_2a

Euk-Vir

Privet_ringspot_virus

replication-associated_polyprotein_2a__YP_009165997__Privet_ringspot_virus__2169960

Identity

69.0 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Privet_ringspot_virus

TaxID: 2169960

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96

PDB

D2 medium residues 168-217

PDB

D3 medium residues 236-291

PDB

Domain cluster: representative

D4 medium residues 383-439_504-529

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	63.5	2.50e-17	68.7%	12.7%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b78A02	3.30.750.80	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like	0.52	32.0	2.99e-01	96.4%	49.0%
3ddjA01	3.10.580.10	Alpha Beta › Roll › CBS-domain › CBS-domain	0.50	28.0	2.38e-01	98.8%	32.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4987009	3837.1.1.1 ↗	alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847	0.55	39.0	3.23e-01	73.5%	100.0%
3176065	327.11.2.32 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29529	0.51	30.0	3.01e-01	94.0%	54.1%
3218262	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.50	41.0	2.73e-01	90.4%	78.6%
3683773	304.114.1.0 ↗	a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain	0.50	35.0	3.08e-01	73.5%	66.9%

D5 medium residues 440-503_530-619

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	100.5	1.40e-28	57.8%	18.4%
PF00978.27	RdRP_2	63.3	2.80e-17	42.2%	14.3%

D6 medium residues 620-694

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	49.1	5.80e-13	100.0%	16.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5hayA02	1.25.40.440	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain	0.64	42.0	4.19e-01	98.7%	64.6%
8g0lB01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	45.0	2.88e-01	96.0%	15.5%
1mhyG02	1.20.1280.30	Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2	0.60	40.0	4.10e-01	100.0%	71.2%
3b9qA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.59	38.0	3.63e-01	100.0%	55.1%
3mekA04	1.25.40.970	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	39.0	3.83e-01	100.0%	66.3%
4g1tA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	35.0	3.78e-01	98.7%	75.4%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.56	38.0	3.11e-01	72.0%	65.8%
4malA00	1.20.58.2200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	34.0	3.70e-01	96.0%	81.4%
4mhlA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.50	39.0	3.18e-01	89.3%	56.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3297359	604.5.1.7 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT	0.59	49.0	4.37e-01	96.0%	80.0%
4033104	604.15.1.0 ↗	alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like	0.57	37.0	3.89e-01	100.0%	73.8%
3610785	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	49.0	3.04e-01	100.0%	18.2%
3175929	109.4.1.1318 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › N1221, DUF3402	0.53	45.0	2.77e-01	100.0%	26.0%
3190662	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	45.0	3.25e-01	100.0%	31.9%
3507343	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	39.0	3.13e-01	84.0%	68.5%