replication-associated_polyprotein

Euk-Vir

Blackberry_virus_E

replication-associated_polyprotein__YP_004659200__Blackberry_virus_E__1043184

Identity

75.5 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Allexivirus› Blackberry_virus_E

TaxID: 1043184

View cluster (13 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-276_413-424

PDB

Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	184.8	3.10e-54	96.8%	68.2%

D2 high residues 649-866

PDB

Domain cluster: rep: p39__YP_004928123__Hibiscus_green_spot_virus_2__1513278__D5-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	115.7	4.10e-33	61.0%	54.8%

D3 medium residues 1-68

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_010087744__Euonymus_yellow_mottle_associated_virus__2586645__D1-67

D4 medium residues 277-333

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009389479__Vanilla_virus_X__2016427__D270-322

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	31.2	1.70e-07	100.0%	18.6%

D5 medium residues 334-408

PDB

D6 medium residues 1063-1211_1257-1289

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3390400	627.1.1.1 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9	0.50	32.0	3.47e-01	87.4%	76.0%

D7 medium residues 1212-1256_1290-1369

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D8 medium residues 1370-1449

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009091814__Yam_virus_X__1503864__D1288-1359