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replication-associated_protein
Euk-VirSquash_yellow_mild_mottle_virus
replication-associated_protein__NP_620883__Squash_yellow_mild_mottle_virus__1051966
Identity
- Accession:
- NP_620883 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Squash_yellow_mild_mottle_virus
TaxID: 1051966
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-116
Domain cluster:
rep: replication-associated_protein__YP_009553348__Odonata-associated_circular_virus-7_Viruses.__X__D5-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 129.6 | 7.50e-38 | 100.0% | 92.0% |
D2
high
residues 188-207_221-347
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08283.17 best | Gemini_AL1_M | 33.6 | 4.90e-08 | 26.5% | 38.3% |
D3
medium
residues 122-187
Domain cluster:
rep: replication_initiator_protein__YP_009241413__Deinbollia_mosaic_virus__1812308__D128-173
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08283.17 best | Gemini_AL1_M | 59.2 | 5.40e-16 | 98.5% | 58.9% |