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replication-associated_protein
Euk-VirGastropod_associated_circular_ssDNA_virus_Viruses.
replication-associated_protein__YP_007517186__Gastropod_associated_circular_ssDNA_virus_Viruses.__X
Identity
- Accession:
- YP_007517186 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
88.4
mean pLDDT
Cluster
View cluster (114 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-104
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 54.1 | 2.20e-14 | 84.2% | 93.9% |
D2
high
residues 167-288
D3
medium
residues 116-160
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 55.0 | 5.29e-01 | 80.0% | 68.6% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 51.0 | 4.15e-01 | 82.2% | 41.5% |
| 1yrtA03 | 1.10.150.920 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 54.0 | 5.38e-01 | 88.9% | 83.3% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 54.0 | 5.34e-01 | 97.8% | 96.0% |
| 1gpjA03 | 1.10.1200.70 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain | 0.68 | 49.0 | 3.97e-01 | 77.8% | 43.5% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 55.0 | 4.75e-01 | 97.8% | 70.7% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 47.0 | 4.26e-01 | 82.2% | 62.3% |
| 4q45A03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.60 | 43.0 | 4.09e-01 | 77.8% | 74.5% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 48.0 | 4.17e-01 | 95.6% | 60.3% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.60 | 43.0 | 2.78e-01 | 80.0% | 15.5% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 45.0 | 4.11e-01 | 100.0% | 64.9% |
| 1sv0D00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 45.0 | 3.88e-01 | 95.6% | 76.5% |
| 2e0iA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 46.0 | 3.64e-01 | 97.8% | 98.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3618122 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.84 | 71.0 | 4.61e-01 | 100.0% | 22.1% |
| 4194508 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 64.0 | 6.06e-01 | 100.0% | 80.0% |
| 3496361 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.75 | 61.0 | 5.93e-01 | 100.0% | 84.0% |
| 4558962 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 62.0 | 5.94e-01 | 100.0% | 81.8% |
| 4316691 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 54.0 | 4.88e-01 | 77.8% | 75.0% |
| 3509159 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.73 | 54.0 | 4.95e-01 | 82.2% | 60.0% |
| 4537351 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.72 | 63.0 | 5.87e-01 | 100.0% | 80.0% |
| 3957642 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 60.0 | 5.69e-01 | 100.0% | 87.3% |
| 4156355 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.69 | 56.0 | 3.87e-01 | 93.3% | 32.5% |
| 4196007 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.61 | 42.0 | 3.58e-01 | 80.0% | 42.3% |
| 3502245 | 101.1.6.13 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_28 | 0.61 | 48.0 | 4.88e-01 | 93.3% | 88.9% |
| 2556087 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.56 | 41.0 | 3.51e-01 | 82.2% | 49.4% |