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replication-associated_protein
Euk-VirDragonfly_larvae_associated_circular_virus-8_Viruses.
replication-associated_protein__YP_009001751__Dragonfly_larvae_associated_circular_virus-8_Viruses.__X
Identity
- Accession:
- YP_009001751 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
69.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-104
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 35.2 | 1.70e-08 | 81.0% | 97.6% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.89 | 77.0 | 7.98e-01 | 100.0% | 95.8% |
| 2hw0A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.81 | 73.0 | 6.96e-01 | 100.0% | 83.5% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.74 | 67.0 | 4.86e-01 | 98.0% | 89.1% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.72 | 65.0 | 5.18e-01 | 98.0% | 87.0% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 48.0 | 5.31e-01 | 70.0% | 98.8% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.70 | 65.0 | 6.16e-01 | 100.0% | 89.0% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.70 | 65.0 | 5.69e-01 | 100.0% | 71.0% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 48.0 | 5.58e-01 | 71.0% | 100.0% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.68 | 61.0 | 4.84e-01 | 100.0% | 71.0% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.68 | 62.0 | 5.56e-01 | 100.0% | 74.6% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 47.0 | 4.94e-01 | 72.0% | 96.6% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.67 | 59.0 | 5.05e-01 | 98.0% | 73.5% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.67 | 60.0 | 5.05e-01 | 99.0% | 80.6% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 4.25e-01 | 71.0% | 62.0% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.65 | 48.0 | 4.60e-01 | 78.0% | 94.8% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 5.16e-01 | 93.0% | 83.6% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.47e-01 | 70.0% | 95.7% |
| 3mcsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 55.0 | 4.36e-01 | 99.0% | 95.8% |
| 3rjaA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 55.0 | 4.23e-01 | 98.0% | 68.6% |
| 5l6gA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 55.0 | 4.20e-01 | 98.0% | 68.1% |
| 3e3xA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 42.0 | 4.36e-01 | 71.0% | 78.7% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.61 | 53.0 | 4.04e-01 | 99.0% | 63.9% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 42.0 | 4.42e-01 | 71.0% | 83.9% |
| 4ud8A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 52.0 | 4.26e-01 | 99.0% | 69.0% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 51.0 | 4.22e-01 | 99.0% | 70.3% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 51.0 | 4.17e-01 | 99.0% | 68.4% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 37.0 | 4.21e-01 | 98.0% | 89.5% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 38.0 | 3.29e-01 | 72.0% | 87.2% |
| 2l03A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 35.0 | 3.92e-01 | 92.0% | 87.8% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.54 | 45.0 | 3.86e-01 | 95.0% | 82.1% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 3.45e-01 | 71.0% | 92.6% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 35.0 | 3.16e-01 | 70.0% | 92.3% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 34.0 | 3.45e-01 | 94.0% | 67.3% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2391478 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.89 | 77.0 | 7.98e-01 | 100.0% | 95.8% |
| 3621982 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.83 | 74.0 | 7.19e-01 | 100.0% | 85.5% |
| 2796430 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.83 | 75.0 | 7.44e-01 | 100.0% | 92.2% |
| 4462306 | 304.55.1.3 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_OBD | 0.80 | 75.0 | 6.61e-01 | 100.0% | 88.6% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.76 | 69.0 | 5.36e-01 | 99.0% | 81.4% |
| 4304749 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.75 | 68.0 | 4.96e-01 | 99.0% | 52.7% |
| 4475127 | 304.55.1.3 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_OBD | 0.74 | 67.0 | 6.24e-01 | 100.0% | 87.2% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.73 | 66.0 | 4.88e-01 | 98.0% | 85.1% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.72 | 65.0 | 5.25e-01 | 99.0% | 91.1% |
| 3706885 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.72 | 49.0 | 4.96e-01 | 70.0% | 83.0% |
| 2834623 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.72 | 65.0 | 5.36e-01 | 98.0% | 89.7% |
| 3555669 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.70 | 50.0 | 4.67e-01 | 73.0% | 70.0% |
| 3937809 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.70 | 63.0 | 5.08e-01 | 98.0% | 88.3% |
| 3922857 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.70 | 62.0 | 4.63e-01 | 98.0% | 80.6% |
| 4015784 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.70 | 62.0 | 4.61e-01 | 99.0% | 56.5% |
| None | — | 0.70 | 63.0 | 4.67e-01 | 98.0% | 83.7% | |
| 3926520 | 304.8.1.23 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N | 0.70 | 63.0 | 5.00e-01 | 97.0% | 87.4% |
| 4011130 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.69 | 62.0 | 4.59e-01 | 99.0% | 58.0% |
| 4299862 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.69 | 47.0 | 4.79e-01 | 71.0% | 81.0% |
| 4018691 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.69 | 61.0 | 4.53e-01 | 99.0% | 57.7% |
| 3728896 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.68 | 61.0 | 4.50e-01 | 99.0% | 57.0% |
| 3365659 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.68 | 53.0 | 5.59e-01 | 82.0% | 100.0% |
| 4263302 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.68 | 61.0 | 4.54e-01 | 99.0% | 55.7% |
| 4030594 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.68 | 60.0 | 5.14e-01 | 98.0% | 72.5% |
| 5112 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.68 | 62.0 | 5.56e-01 | 100.0% | 74.6% |
| 4030911 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.68 | 46.0 | 5.01e-01 | 71.0% | 100.0% |
| 3728041 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.67 | 60.0 | 4.45e-01 | 99.0% | 55.8% |
| 4243894 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.67 | 59.0 | 4.46e-01 | 99.0% | 57.3% |
| 4407903 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.67 | 59.0 | 4.45e-01 | 99.0% | 57.6% |
| 4222843 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.67 | 59.0 | 4.33e-01 | 99.0% | 56.0% |
| 4219489 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.66 | 60.0 | 4.33e-01 | 99.0% | 54.9% |
| 4016693 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.66 | 58.0 | 4.17e-01 | 99.0% | 48.2% |
| 3497180 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.66 | 57.0 | 4.96e-01 | 96.0% | 72.9% |
| 4119510 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.65 | 45.0 | 4.55e-01 | 71.0% | 84.0% |
| 3277124 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.65 | 57.0 | 4.27e-01 | 99.0% | 60.0% |
| 4018050 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.65 | 57.0 | 4.24e-01 | 99.0% | 57.6% |
| 3596967 | 304.46.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain | 0.65 | 56.0 | 4.90e-01 | 98.0% | 72.2% |
| 3291378 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.65 | 58.0 | 4.39e-01 | 99.0% | 56.6% |
| 4075488 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 57.0 | 4.19e-01 | 99.0% | 56.7% |
| 3633444 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 56.0 | 4.22e-01 | 99.0% | 56.9% |
| 4013989 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 57.0 | 4.27e-01 | 99.0% | 57.0% |
| 1699308 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.64 | 56.0 | 4.12e-01 | 99.0% | 56.9% |
| 4606373 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.64 | 55.0 | 4.10e-01 | 98.0% | 56.3% |
| 3164197 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.63 | 44.0 | 4.86e-01 | 72.0% | 92.3% |
| 5066414 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.63 | 44.0 | 4.81e-01 | 72.0% | 92.5% |
| 4027426 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.63 | 44.0 | 4.05e-01 | 72.0% | 58.5% |
| 4994851 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.62 | 43.0 | 3.77e-01 | 70.0% | 91.0% |
| 4011256 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.62 | 54.0 | 4.11e-01 | 99.0% | 58.4% |
| 4439773 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.61 | 48.0 | 5.17e-01 | 100.0% | 98.8% |
| 4562438 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.61 | 52.0 | 4.50e-01 | 97.0% | 97.6% |
| 3738363 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 46.0 | 4.29e-01 | 91.0% | 66.4% |
| 4017351 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 52.0 | 3.76e-01 | 99.0% | 55.9% |
| 5060115 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 30.0 | 3.18e-01 | 80.0% | 53.3% |
| 3423206 | 304.59.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like | 0.56 | 43.0 | 4.47e-01 | 82.0% | 96.7% |
| 3762904 | 11.1.1.1356 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig, C2-set_2 | 0.55 | 45.0 | 3.28e-01 | 87.0% | 94.7% |
| 3333290 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.55 | 38.0 | 3.16e-01 | 71.0% | 71.7% |
| 3962760 | 10.18.1.2 ↗ | beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like › DUF1254 | 0.54 | 40.0 | 2.78e-01 | 80.0% | 30.0% |
| 3928826 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.53 | 37.0 | 3.24e-01 | 74.0% | 59.4% |
| 3848626 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.52 | 38.0 | 4.05e-01 | 96.0% | 91.8% |
| 4433786 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.51 | 38.0 | 4.08e-01 | 100.0% | 96.5% |
D2
high
residues 116-156
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.73 | 61.0 | 4.84e-01 | 100.0% | 57.3% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 55.0 | 5.08e-01 | 92.7% | 64.8% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 57.0 | 5.53e-01 | 100.0% | 97.9% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 54.0 | 5.26e-01 | 100.0% | 90.0% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.26e-01 | 100.0% | 57.5% |
| 3zrhA01 | 1.25.40.560 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 47.0 | 3.80e-01 | 95.1% | 64.6% |
| 3czpB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 2.92e-01 | 90.2% | 25.4% |
| 5w6lA01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 3.03e-01 | 100.0% | 19.4% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.57 | 39.0 | 2.52e-01 | 70.7% | 14.8% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 40.0 | 3.66e-01 | 97.6% | 74.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4173465 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.75 | 62.0 | 5.67e-01 | 100.0% | 69.1% |
| 3945210 | 101.1.6.25 ↗ | alpha arrays › HTH › HTH › TrpR › DUF2857 | 0.75 | 63.0 | 6.36e-01 | 100.0% | 95.0% |
| 4156355 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.72 | 59.0 | 4.04e-01 | 100.0% | 31.9% |
| 3968864 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.64 | 54.0 | 4.53e-01 | 100.0% | 61.3% |
| 3196435 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 39.0 | 3.87e-01 | 90.2% | 82.0% |
D3
medium
residues 164-196_230-256