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replication-associated_protein

Euk-Vir

Dragonfly_larvae_associated_circular_virus-9_Viruses.

replication-associated_protein__YP_009001753__Dragonfly_larvae_associated_circular_virus-9_Viruses.__X

Identity

Accession:
YP_009001753 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

73.4 mean pLDDT

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-276
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 24.3 5.00e-05 73.3% 67.6%
D2 medium residues 29-119
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 80.7 1.10e-22 91.2% 98.8%
D3 medium residues 126-167
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 5.68e-01 95.2% 100.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 59.0 4.63e-01 97.6% 56.6%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.72 59.0 4.05e-01 100.0% 61.8%
2avuB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.69 54.0 4.08e-01 90.5% 35.6%
6e6oA00 1.20.50.10 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › Pheromone ER-1 0.69 51.0 5.19e-01 88.1% 87.5%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.69 55.0 4.81e-01 92.9% 58.5%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 57.0 3.98e-01 100.0% 65.5%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 53.0 4.26e-01 95.2% 61.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 47.0 3.96e-01 85.7% 86.5%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.61 50.0 4.63e-01 95.2% 80.4%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.61 40.0 3.49e-01 83.3% 44.6%
2m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.47e-01 100.0% 80.7%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 46.0 2.90e-01 95.2% 16.8%
2rcnA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.58 43.0 4.00e-01 90.5% 83.9%
7egfc01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 42.0 3.29e-01 78.6% 45.3%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 40.0 3.80e-01 76.2% 90.6%
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 42.0 3.33e-01 83.3% 64.8%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.55e-01 100.0% 52.4%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 39.0 3.69e-01 85.7% 88.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4651792 101.1.13.1 ↗ alpha arrays › HTH › HTH › Flagellar transcriptional activator FlhD › FlhD 0.68 54.0 4.53e-01 97.6% 50.7%
4855198 101.1.13.1 ↗ alpha arrays › HTH › HTH › Flagellar transcriptional activator FlhD › FlhD 0.67 53.0 4.63e-01 100.0% 58.5%
4017506 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 53.0 3.54e-01 95.2% 29.5%
3691453 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.65 52.0 3.89e-01 95.2% 60.0%
4976088 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.62 50.0 4.55e-01 92.9% 86.7%
957914 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.62 49.0 3.01e-01 100.0% 13.5%
3613034 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 3.32e-01 97.6% 27.1%
3945211 101.1.13.2 ↗ alpha arrays › HTH › HTH › Flagellar transcriptional activator FlhD › DUF2857 0.62 46.0 4.29e-01 95.2% 65.5%
3855948 4215.1.1.1 ↗ alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like › SOCS_box 0.61 46.0 4.54e-01 92.9% 80.0%
4985070 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.60 47.0 4.14e-01 100.0% 69.3%
4255639 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.60 48.0 4.02e-01 100.0% 83.5%
2325135 4215.1.1.1 ↗ alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like › SOCS_box 0.57 44.0 4.17e-01 92.9% 70.4%
3783310 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 45.0 2.89e-01 100.0% 40.4%