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replication-associated_protein

Euk-Vir

Dragonfly_larvae_associated_circular_virus-10_Viruses.

replication-associated_protein__YP_009001756__Dragonfly_larvae_associated_circular_virus-10_Viruses.__X

Identity

Accession:
YP_009001756 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

78.9 mean pLDDT

Cluster

View cluster (111 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-103
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 74.5 9.50e-21 91.6% 96.3%
D2 high residues 119-173
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.66 48.0 3.45e-01 80.0% 26.9%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.63 54.0 3.97e-01 100.0% 44.9%
1yrtA03 1.10.150.920 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 41.0 4.36e-01 72.7% 79.2%
1zhxA02 1.10.287.2720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 46.0 3.93e-01 80.0% 56.3%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 47.0 4.27e-01 85.5% 63.4%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.61 38.0 3.18e-01 74.5% 36.8%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.60 47.0 4.12e-01 83.6% 81.2%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.60 43.0 3.81e-01 80.0% 98.9%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 53.0 4.56e-01 98.2% 88.2%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 53.0 3.90e-01 100.0% 94.9%
2uxwA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 51.0 3.55e-01 100.0% 69.4%
4am6A03 3.30.420.580 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 48.0 3.14e-01 96.4% 45.3%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.57 40.0 3.65e-01 76.4% 70.5%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.56 43.0 4.22e-01 83.6% 91.8%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.55 40.0 3.62e-01 78.2% 60.0%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 3.73e-01 100.0% 92.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929490 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.75 65.0 5.50e-01 100.0% 95.8%
4397604 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.73 63.0 4.78e-01 96.4% 75.4%
4293828 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.69 60.0 4.64e-01 100.0% 77.6%
4015450 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.67 51.0 4.66e-01 80.0% 67.1%
3419116 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 47.0 4.67e-01 78.2% 86.7%
3232990 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.66 51.0 4.52e-01 89.1% 60.0%
3534511 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.66 47.0 3.37e-01 81.8% 26.2%
4262615 601.4.1.27 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › DUF1516 0.66 50.0 3.75e-01 89.1% 34.6%
4938085 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.65 46.0 3.95e-01 78.2% 50.5%
3634826 605.1.1.108 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.64 49.0 4.54e-01 94.5% 64.3%
3874130 133.1.1.5 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_Alsin 0.62 55.0 3.70e-01 100.0% 59.0%
3516570 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.61 48.0 4.19e-01 83.6% 57.5%
3201044 7087.1.1.1 ↗ alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.59 54.0 3.85e-01 100.0% 98.7%
4962746 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.59 43.0 3.60e-01 89.1% 44.0%
4881805 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 43.0 3.85e-01 89.1% 54.3%
4889303 10.13.1.3 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › PhoLip_ATPase_N 0.59 43.0 2.81e-01 89.1% 17.1%
5072934 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.57 49.0 3.14e-01 94.5% 31.2%
4458167 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 45.0 3.19e-01 85.5% 32.7%
3605868 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 51.0 4.03e-01 100.0% 79.1%
3561537 109.4.1.898 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_leprecan 0.56 49.0 2.96e-01 98.2% 60.3%
3927220 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 41.0 3.88e-01 85.5% 84.6%
D3 high residues 178-315
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764