←Back to structures
replication-associated_protein
Euk-VirCassava_associated_gemycircularvirus_1
replication-associated_protein__YP_009021043__Cassava_associated_gemycircularvirus_1__1985374
Identity
- Accession:
- YP_009021043 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
85.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Genomoviridae›
Gemycircularvirus›
Cassava_associated_gemycircularvirus_1
TaxID: 1985374
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-100
Domain cluster:
rep: RepA__YP_009252354__Faeces_associated_gemycircularvirus_20__1843740__D6-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 32.9 | 7.80e-08 | 100.0% | 59.3% |
D2
high
residues 173-326
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
D3
medium
residues 111-172
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 41.0 | 3.60e-01 | 72.6% | 57.8% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 3.83e-01 | 72.6% | 70.2% |
| 2jpnA00 | 1.20.1280.210 | Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 | 0.60 | 41.0 | 3.85e-01 | 72.6% | 68.4% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.60 | 45.0 | 4.27e-01 | 85.5% | 100.0% |
| 2qsrA01 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.59 | 45.0 | 3.49e-01 | 87.1% | 50.3% |
| 3i9v104 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.58 | 42.0 | 3.64e-01 | 79.0% | 74.8% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.53e-01 | 75.8% | 62.6% |
| 2ys8A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.50 | 36.0 | 3.33e-01 | 82.3% | 82.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959683 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 51.0 | 3.25e-01 | 83.9% | 42.7% |
| 4156528 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.62 | 42.0 | 2.62e-01 | 74.2% | 12.2% |
| 3907137 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.61 | 42.0 | 2.63e-01 | 74.2% | 12.3% |
| 5048562 | 2500.1.1.4 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › DUF711 | 0.59 | 44.0 | 2.68e-01 | 80.6% | 22.8% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.59 | 41.0 | 3.89e-01 | 72.6% | 61.3% |
| 3960025 | 605.1.1.13 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Transposase_mut | 0.59 | 41.0 | 3.56e-01 | 75.8% | 52.4% |
| 5002258 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.59 | 40.0 | 3.80e-01 | 74.2% | 65.0% |
| 3960578 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.58 | 41.0 | 3.55e-01 | 75.8% | 52.4% |
| 3961709 | 633.16.1.7 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › Transposase_mut | 0.58 | 41.0 | 3.53e-01 | 75.8% | 52.4% |
| 3167402 | 108.1.1.116 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › SAGA-Tad1 | 0.58 | 41.0 | 3.75e-01 | 79.0% | 74.4% |
| 4958656 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.57 | 44.0 | 2.92e-01 | 88.7% | 42.4% |
| 3631439 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.56 | 43.0 | 3.88e-01 | 88.7% | 67.4% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.55 | 40.0 | 3.46e-01 | 82.3% | 70.9% |
| 3922115 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.53 | 37.0 | 2.70e-01 | 75.8% | 23.4% |
| 3214996 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 2.97e-01 | 98.4% | 65.7% |