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replication-associated_protein

Euk-Vir

Dragonfly_orbiculatusvirus_Viruses.

replication-associated_protein__YP_009021243__Dragonfly_orbiculatusvirus_Viruses.__X

Identity

Accession:: YP_009021243 ↗
Protein ID:: replication-associated_protein
Kingdom:: euk

Quality

86.2 mean pLDDT

Cluster

View cluster (57 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-102

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	62.7	4.40e-17	88.1%	96.3%

D2 high residues 107-146

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ljkA03	1.10.1390.10	Mainly Alpha › Orthogonal Bundle › Phosphoglucose isomerase, C-terminal domain ›	0.72	53.0	5.42e-01	100.0%	87.2%
5dukB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.71	59.0	5.14e-01	100.0%	74.6%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.64	49.0	3.50e-01	90.0%	88.4%
1hs7A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	50.0	3.95e-01	100.0%	80.4%
1zmbA02	6.10.170.10	Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ›	0.60	42.0	4.30e-01	75.0%	88.9%
2e9xA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	44.0	3.33e-01	100.0%	82.8%
2n5hA00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.57	44.0	3.45e-01	87.5%	84.4%
5w6lA01	3.40.50.11550	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	45.0	2.91e-01	100.0%	18.5%
3czpB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	47.0	2.99e-01	100.0%	28.2%
2qyuA04	1.10.4140.10	Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL)	0.54	44.0	2.93e-01	100.0%	84.5%
1rajA01	4.10.880.10	Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase)	0.52	42.0	4.11e-01	95.0%	97.7%
3ff5A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	38.0	3.65e-01	95.0%	81.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3289421	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.65	55.0	3.79e-01	100.0%	60.0%
3600606	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.62	50.0	3.40e-01	100.0%	65.1%
4976768	2498.5.1.0 ↗	mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like	0.60	46.0	3.60e-01	100.0%	77.3%
1684875	132.1.1.1 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding	0.57	44.0	3.45e-01	87.5%	84.4%

D3 high residues 164-304

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764