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replication-associated_protein

Euk-Vir

Bromus-associated_circular_DNA_virus_2_Viruses.

replication-associated_protein__YP_009116781__Bromus-associated_circular_DNA_virus_2_Viruses.__X

Identity

Accession:
YP_009116781 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

87.6 mean pLDDT

Cluster

View cluster (491 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-99
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 43.2 5.30e-11 89.0% 85.4%
D2 high residues 110-156
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.71 58.0 3.71e-01 100.0% 18.0%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.66 56.0 4.75e-01 100.0% 68.7%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.41e-01 100.0% 52.9%
2jfrA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 50.0 3.26e-01 100.0% 17.9%
1vgpA02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.63 41.0 3.18e-01 78.7% 29.8%
4aktB00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.63 54.0 3.27e-01 100.0% 59.1%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 50.0 3.50e-01 97.9% 91.4%
1gtvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 3.26e-01 91.5% 32.7%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 50.0 4.37e-01 100.0% 75.3%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 51.0 3.58e-01 100.0% 62.1%
2genA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 52.0 3.51e-01 100.0% 41.0%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 49.0 4.28e-01 100.0% 59.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 49.0 4.41e-01 100.0% 95.8%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.32e-01 100.0% 76.8%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 47.0 4.10e-01 93.6% 78.2%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.58 44.0 3.52e-01 87.2% 61.5%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.33e-01 91.5% 85.4%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.96e-01 95.7% 62.8%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.08e-01 100.0% 94.2%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 43.0 3.44e-01 100.0% 39.8%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.53 44.0 3.70e-01 97.9% 72.9%
1mkiA02 1.10.1500.10 Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › 0.53 42.0 3.20e-01 97.9% 92.8%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.53 42.0 3.29e-01 95.7% 47.8%
2plrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.73e-01 95.7% 28.3%
1jfiB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.52 42.0 3.20e-01 100.0% 39.3%
3v9pB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.95e-01 100.0% 31.7%
1hg3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 2.72e-01 93.6% 21.9%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 2.90e-01 100.0% 34.8%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 39.0 2.79e-01 100.0% 49.3%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.51 41.0 3.43e-01 93.6% 76.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480380 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.78 63.0 4.89e-01 100.0% 40.0%
3737690 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.76 61.0 4.80e-01 100.0% 41.9%
3510833 592.1.1.2 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI 0.74 63.0 4.67e-01 100.0% 36.8%
3335763 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.73 58.0 4.54e-01 100.0% 40.0%
3281853 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.72 63.0 4.45e-01 95.7% 48.9%
5067760 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.71 62.0 5.02e-01 100.0% 84.4%
4175832 2008.1.1.136 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6602 0.70 56.0 3.59e-01 91.5% 41.3%
3948171 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 54.0 4.18e-01 87.2% 60.9%
3473525 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 4.94e-01 91.5% 64.6%
3838401 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.68 48.0 3.78e-01 74.5% 44.0%
3759119 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.67 55.0 4.77e-01 97.9% 70.0%
3279711 191.1.1.26 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 0.66 57.0 4.02e-01 100.0% 50.0%
3960608 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.63 52.0 3.84e-01 95.7% 97.7%
5000777 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 47.0 3.86e-01 87.2% 44.7%
4945578 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.61 50.0 3.45e-01 95.7% 93.3%
3477926 3281.1.1.0 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.61 41.0 4.21e-01 74.5% 73.3%
3933561 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 49.0 3.95e-01 100.0% 75.2%
5049790 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.59 47.0 3.22e-01 91.5% 91.4%
3281517 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 47.0 3.29e-01 100.0% 58.3%
3283630 601.7.1.18 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_SAV_6107 0.51 40.0 3.22e-01 93.6% 41.8%
D3 high residues 179-314
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283