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replication-associated_protein

Euk-Vir

Trifolium-associated_circular_DNA_virus_1_Viruses.

replication-associated_protein__YP_009117064__Trifolium-associated_circular_DNA_virus_1_Viruses.__X

Identity

Accession:
YP_009117064 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

78.8 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-139
PDB
Domain cluster: rep: replication-associated_protein__YP_009553657__Arctopus_echinatus-associated_virus_Viruses.__X__D12-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 57.2 2.30e-15 99.0% 88.5%
D2 high residues 193-351
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
D3 medium residues 150-186
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g5cA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.75 57.0 3.69e-01 86.5% 39.6%
3amjB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.72 50.0 3.17e-01 75.7% 36.3%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 45.0 3.98e-01 73.0% 49.1%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.65 55.0 4.13e-01 100.0% 61.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.66e-01 100.0% 87.2%
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 49.0 3.23e-01 100.0% 27.2%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.61 45.0 4.56e-01 83.8% 88.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.60 47.0 4.24e-01 100.0% 82.3%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.59 44.0 2.68e-01 100.0% 22.5%
1sxjA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.58 39.0 2.90e-01 73.0% 54.7%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.58 42.0 2.77e-01 75.7% 87.0%
1vg5A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 45.0 3.80e-01 97.3% 54.8%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 41.0 3.89e-01 83.8% 68.0%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.56 40.0 3.48e-01 86.5% 47.8%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.54 38.0 3.64e-01 78.4% 64.6%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 42.0 3.07e-01 97.3% 75.4%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.53 40.0 3.04e-01 97.3% 89.2%
1zvwA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 43.0 3.67e-01 100.0% 65.2%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 45.0 3.71e-01 100.0% 61.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4392311 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.81 68.0 6.47e-01 100.0% 91.1%
3586125 592.5.1.0 ↗ alpha arrays › PWI domain-like › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain 0.75 64.0 5.67e-01 100.0% 70.9%
4933312 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.71 61.0 4.11e-01 100.0% 42.9%
4012690 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 51.0 3.44e-01 83.8% 37.5%
5002775 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.67 53.0 5.24e-01 100.0% 90.0%
3988447 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.66 47.0 4.27e-01 78.4% 96.4%
4114979 2002.1.1.71 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SOR_SNZ 0.65 48.0 2.92e-01 97.3% 21.6%
4883934 2003.1.1.155 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored 0.61 49.0 3.23e-01 97.3% 29.7%
5082910 140.1.1.38 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.55 44.0 3.07e-01 100.0% 36.0%
3264584 5010.1.1.0 ↗ extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV 0.53 35.0 3.48e-01 81.1% 74.0%
3897990 150.3.1.23 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL11 0.51 41.0 2.79e-01 100.0% 85.3%