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replication-associated_protein
Euk-VirAvon-Heathcote_Estuary_associated_circular_virus_27
replication-associated_protein__YP_009126881__Avon-Heathcote_Estuary_associated_circular_virus_27__1618251
Identity
- Accession:
- YP_009126881 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
80.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Avon-Heathcote_Estuary_associated_circular_virus_27
TaxID: 1618251
Cluster
View cluster (57 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-101
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 58.0 | 1.30e-15 | 82.3% | 75.6% |
D2
high
residues 111-166
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.64 | 47.0 | 4.14e-01 | 80.4% | 85.1% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 42.0 | 4.27e-01 | 73.2% | 73.2% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 4.50e-01 | 91.1% | 68.4% |
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.56 | 42.0 | 4.07e-01 | 85.7% | 71.6% |
| 3htvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 3.17e-01 | 98.2% | 29.2% |
| 2hraA01 | 3.40.30.70 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.56 | 46.0 | 4.00e-01 | 92.9% | 96.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4926838 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.68 | 55.0 | 5.30e-01 | 94.6% | 80.0% |
| 5022532 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 53.0 | 4.95e-01 | 96.4% | 82.7% |
| 3502119 | 101.1.2.69 ↗ | alpha arrays › HTH › HTH › winged helix domain › La | 0.57 | 42.0 | 3.72e-01 | 83.9% | 73.3% |
D3
high
residues 169-303
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764