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replication-associated_protein

Euk-Vir

Avon-Heathcote_Estuary_associated_circular_virus_4

replication-associated_protein__YP_009126882__Avon-Heathcote_Estuary_associated_circular_virus_4__1618255

Identity

Accession:
YP_009126882 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Jormunvirales› Draupnirviridae› Atroxivirus› Avon-Heathcote_Estuary_associated_circular_virus_4

TaxID: 1618255

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 157-247
PDB
D2 medium residues 11-101
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 51.0 2.00e-13 91.2% 98.8%
D3 medium residues 110-148
PDB
Domain cluster: rep: replication_associated_protein__YP_009237530__Lake_Sarah-associated_circular_virus-16_Viruses.__X__D117-155
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.72 58.0 4.62e-01 94.9% 75.6%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 5.20e-01 89.7% 70.6%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.71 51.0 3.20e-01 79.5% 60.2%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 59.0 5.57e-01 100.0% 94.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 54.0 4.37e-01 89.7% 53.8%
3ihjA02 1.10.287.1970 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 53.0 5.33e-01 100.0% 94.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 57.0 5.04e-01 100.0% 90.0%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 56.0 5.09e-01 100.0% 69.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.98e-01 100.0% 94.6%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 54.0 5.17e-01 89.7% 80.0%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.67 51.0 5.15e-01 97.4% 92.7%
5douA01 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.66 52.0 3.55e-01 100.0% 22.2%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.66 50.0 4.19e-01 100.0% 46.6%
5vyoD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 53.0 3.40e-01 92.3% 96.8%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.65 53.0 3.45e-01 94.9% 62.8%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.64 53.0 4.52e-01 100.0% 72.9%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.64 48.0 3.82e-01 97.4% 45.2%
5macA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.62 49.0 2.97e-01 100.0% 14.4%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 43.0 3.80e-01 94.9% 51.4%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 48.0 3.38e-01 97.4% 85.9%
2hpvA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.58 48.0 3.04e-01 97.4% 33.3%
4p3yB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.07e-01 100.0% 100.0%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.61e-01 100.0% 96.5%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 39.0 3.43e-01 87.2% 79.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933758 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 59.0 5.75e-01 84.6% 84.4%
3884353 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.75 58.0 4.15e-01 87.2% 83.5%
4165646 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.73 58.0 5.39e-01 100.0% 69.1%
3526914 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.73 57.0 5.64e-01 100.0% 84.4%
5018585 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.72 57.0 5.15e-01 89.7% 65.5%
3210083 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.14e-01 92.3% 66.7%
4664976 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.72 59.0 3.65e-01 97.4% 16.7%
3242226 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.72 59.0 4.29e-01 92.3% 87.6%
3797530 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 61.0 5.23e-01 100.0% 63.1%
3706139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.31e-01 89.7% 76.0%
5004841 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 60.0 5.13e-01 97.4% 63.1%
3287536 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.35e-01 87.2% 77.8%
3701286 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 57.0 5.29e-01 89.7% 76.0%
3963874 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 62.0 4.37e-01 100.0% 34.2%
4162857 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.71 60.0 5.57e-01 97.4% 76.0%
5004327 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 54.0 3.87e-01 84.6% 37.4%
5034899 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.71 60.0 3.77e-01 100.0% 19.1%
4965811 101.1.1.559 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.70 58.0 5.11e-01 97.4% 68.3%
3632861 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 58.0 5.57e-01 100.0% 84.4%
3601930 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.70 61.0 3.90e-01 100.0% 24.3%
3279784 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.24e-01 100.0% 87.3%
3694935 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.69 57.0 3.70e-01 100.0% 29.5%
5077769 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 59.0 5.47e-01 100.0% 82.0%
3723795 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 54.0 4.89e-01 89.7% 67.3%
4952807 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.68 57.0 4.64e-01 97.4% 50.7%
5047812 101.29.1.0 ↗ alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.67 51.0 4.56e-01 89.7% 60.0%
4959042 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.67 53.0 3.99e-01 94.9% 47.6%
3640035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 56.0 4.41e-01 97.4% 47.1%
4510105 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.50e-01 97.4% 97.5%
1149746 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.65 49.0 4.79e-01 100.0% 79.2%
3589364 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.65 54.0 3.81e-01 100.0% 30.4%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.65 50.0 4.57e-01 89.7% 65.5%
3943489 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.65 50.0 3.89e-01 94.9% 58.0%
5021368 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.64 51.0 3.08e-01 97.4% 12.2%
3829621 2004.1.1.105 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.62 43.0 2.89e-01 76.9% 46.6%
3574305 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.60 48.0 2.74e-01 97.4% 8.7%
4932167 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.60 50.0 3.59e-01 100.0% 88.5%
4937703 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 43.0 4.40e-01 92.3% 100.0%
4950546 101.1.6.41 ↗ alpha arrays › HTH › HTH › TrpR › DUF4096 0.55 41.0 3.40e-01 97.4% 42.2%
4278540 7581.1.1.2 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt 0.51 37.0 2.49e-01 100.0% 31.2%