replication-associated_protein

Euk-Vir

Avon-Heathcote_Estuary_associated_circular_virus_5

replication-associated_protein__YP_009126884__Avon-Heathcote_Estuary_associated_circular_virus_5__1618256

Identity

73.3 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Avon-Heathcote_Estuary_associated_circular_virus_5

TaxID: 1618256

View cluster (7 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-317

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	31.2	3.80e-07	60.7%	97.1%

D2 medium residues 6-101

PDB

D3 medium residues 113-154

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dfgA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	50.0	4.93e-01	100.0%	97.9%
2jaeA03	1.20.1440.240	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.61	45.0	3.47e-01	83.3%	39.6%
2x48A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.58	43.0	4.19e-01	97.6%	74.1%
3pieC01	3.40.50.12390	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	46.0	2.89e-01	100.0%	49.6%
1u0jA01	1.10.10.950	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.56	42.0	4.03e-01	95.2%	92.7%
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.55	37.0	2.78e-01	73.8%	36.0%
1r9lA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.54	44.0	3.05e-01	100.0%	85.7%
1fcdC02	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.53	39.0	3.28e-01	95.2%	77.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3947236	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.71	57.0	5.44e-01	100.0%	94.4%
4000360	101.1.1.35 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq	0.62	48.0	4.61e-01	100.0%	81.8%
4934857	101.1.2.927 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7347	0.61	50.0	4.15e-01	100.0%	75.3%