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replication-associated_protein

Euk-Vir

Avon-Heathcote_Estuary_associated_circular_virus_11

replication-associated_protein__YP_009126901__Avon-Heathcote_Estuary_associated_circular_virus_11__1618234

Identity

Accession:
YP_009126901 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Avon-Heathcote_Estuary_associated_circular_virus_11

TaxID: 1618234

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-316
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 35.4 1.80e-08 76.0% 98.1%
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 70.0 5.82e-01 100.0% 61.9%
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 68.0 5.61e-01 100.0% 60.7%
2bjvA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 66.0 6.01e-01 100.0% 84.9%
3n70A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 63.0 5.96e-01 100.0% 81.7%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 64.0 5.77e-01 100.0% 72.8%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 4.72e-01 100.0% 46.7%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 4.50e-01 100.0% 42.6%
3nbxX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 62.0 5.18e-01 100.0% 60.8%
2ewvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 62.0 4.92e-01 100.0% 59.3%
1l8qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 62.0 5.55e-01 100.0% 76.4%
6qelJ01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 62.0 5.38e-01 100.0% 70.2%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 5.69e-01 100.0% 89.3%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 5.14e-01 100.0% 86.4%
1d2nA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 60.0 5.31e-01 100.0% 75.6%
7tjhE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 59.0 5.17e-01 100.0% 89.3%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 56.0 5.07e-01 100.0% 81.4%
2bvdA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 55.0 4.22e-01 97.5% 99.3%
2b8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 56.0 5.40e-01 100.0% 97.8%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 4.47e-01 100.0% 56.2%
7fbhB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 4.04e-01 94.2% 80.3%
1xtiA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 52.0 4.73e-01 99.2% 93.3%
1zitA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 43.0 4.31e-01 93.4% 77.7%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 51.0 4.16e-01 100.0% 53.7%
7wj9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 49.0 3.73e-01 97.5% 92.0%
2yv4A00 3.40.50.11030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain 0.56 43.0 4.63e-01 100.0% 95.1%
1ab5A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 4.11e-01 93.4% 74.4%
2qg6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.99e-01 100.0% 57.7%
3gt7A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 42.0 4.11e-01 93.4% 72.7%
3i42A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 4.15e-01 93.4% 78.8%
4nicA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 4.16e-01 93.4% 79.5%
5x5jA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 4.15e-01 95.9% 78.8%
3n53A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 38.0 3.90e-01 93.4% 72.6%
6fu1A00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.55 47.0 3.37e-01 95.9% 49.4%
3a0uA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 40.0 4.07e-01 93.4% 80.0%
2wb4B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 3.27e-01 95.9% 35.6%
7pvaB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 4.14e-01 95.9% 80.7%
3gl9A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 4.20e-01 95.9% 81.7%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 4.09e-01 93.4% 76.5%
2eplX02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 3.52e-01 95.9% 97.4%
3crnA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 41.0 4.04e-01 97.5% 76.0%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.01e-01 100.0% 70.4%
2qzjA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 40.0 4.09e-01 97.5% 80.2%
3rqiA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 40.0 4.04e-01 97.5% 77.2%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 49.0 3.72e-01 100.0% 49.8%
1w25A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 3.87e-01 95.9% 69.5%
3kcnB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 41.0 3.95e-01 97.5% 72.3%
4q7eA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 4.04e-01 97.5% 78.4%
1ly1A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 4.10e-01 100.0% 71.7%
2pl1A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 4.03e-01 98.3% 81.7%
1i60A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 45.0 3.58e-01 98.3% 88.0%
6qrjA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 3.97e-01 95.9% 83.5%
3u7eB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 4.12e-01 100.0% 76.6%
7lzaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 4.04e-01 97.5% 83.1%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.58e-01 94.2% 69.5%
3czqC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.57e-01 100.0% 59.9%
3grcA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 4.04e-01 99.2% 81.6%
6zxbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 3.95e-01 97.5% 76.9%
1p5zB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.77e-01 100.0% 89.1%
3gnnB02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 39.0 4.17e-01 100.0% 94.2%
6ontA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.92e-01 97.5% 81.0%
3lufB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.92e-01 97.5% 80.2%
3c3mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.92e-01 99.2% 82.1%
2p62A01 3.40.50.10620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains 0.50 44.0 4.18e-01 100.0% 90.5%
5di3B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.59e-01 92.6% 61.3%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618122 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.86 78.0 6.53e-01 100.0% 60.0%
4158189 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.84 79.0 7.09e-01 100.0% 76.2%
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.78 73.0 5.45e-01 100.0% 47.5%
4542391 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 72.0 5.61e-01 100.0% 52.0%
4812297 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.76 70.0 5.85e-01 100.0% 61.5%
3968336 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 69.0 5.01e-01 100.0% 45.9%
9753 2004.1.1.48 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C 0.75 70.0 5.81e-01 100.0% 60.2%
4611376 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 68.0 4.75e-01 100.0% 37.9%
4116942 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.75 68.0 4.83e-01 100.0% 40.6%
3971890 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 68.0 5.85e-01 100.0% 76.8%
None — 0.74 68.0 4.75e-01 100.0% 38.4%
4264453 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.74 68.0 5.73e-01 100.0% 73.0%
3976865 2004.1.1.584 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase 0.74 68.0 5.76e-01 100.0% 75.4%
4009589 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.74 68.0 5.70e-01 100.0% 74.5%
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.74 66.0 5.55e-01 100.0% 59.5%
4974221 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 67.0 5.81e-01 100.0% 78.9%
4008983 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 67.0 5.50e-01 100.0% 72.1%
3944906 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 67.0 5.84e-01 100.0% 79.4%
4457300 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 67.0 5.88e-01 100.0% 83.4%
4998586 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 64.0 5.29e-01 100.0% 54.8%
4926850 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.72 64.0 5.87e-01 100.0% 74.2%
4021261 2004.1.1.292 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase 0.72 67.0 5.48e-01 100.0% 68.1%
3707244 2004.1.1.139 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Torsin 0.71 65.0 5.15e-01 100.0% 64.9%
3494883 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.71 66.0 5.33e-01 100.0% 74.5%
5012900 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.70 64.0 5.12e-01 100.0% 61.3%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 65.0 4.86e-01 100.0% 49.5%
3414369 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.70 66.0 5.26e-01 100.0% 66.7%
3839782 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.70 65.0 4.99e-01 100.0% 67.7%
3255516 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.70 64.0 4.84e-01 100.0% 50.9%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 4.90e-01 100.0% 54.1%
3197159 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 64.0 4.34e-01 100.0% 34.2%
3495061 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 4.90e-01 100.0% 54.4%
3811172 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 4.79e-01 100.0% 50.0%
4078827 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 4.76e-01 100.0% 48.7%
3602833 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.70 64.0 4.79e-01 100.0% 50.7%
4323365 2004.1.1.68 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21 0.70 64.0 5.49e-01 100.0% 69.5%
3681670 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.70 64.0 4.67e-01 100.0% 46.0%
4318504 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.70 64.0 5.69e-01 100.0% 84.7%
3476274 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 4.86e-01 100.0% 53.1%
None — 0.69 64.0 4.51e-01 100.0% 40.6%
3382056 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 64.0 4.26e-01 100.0% 32.2%
3698933 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.69 63.0 4.79e-01 100.0% 51.8%
3976110 2004.1.1.641 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF6079 0.69 63.0 4.71e-01 100.0% 80.3%
3411152 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.69 63.0 5.01e-01 100.0% 60.4%
3461969 2004.1.1.675 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2, NBD_SMAX1 0.69 63.0 3.93e-01 100.0% 28.3%
5034518 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.68 63.0 5.16e-01 100.0% 62.8%
4974817 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 63.0 5.36e-01 100.0% 72.6%
3299800 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.68 62.0 4.86e-01 100.0% 70.2%
5023501 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.68 62.0 4.82e-01 100.0% 67.3%
3825234 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.68 62.0 5.10e-01 100.0% 74.9%
3604643 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.68 62.0 4.76e-01 100.0% 55.1%
4969408 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 51.0 4.57e-01 99.2% 57.6%
3377628 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.67 61.0 5.27e-01 100.0% 80.0%
3166204 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.66 61.0 4.86e-01 100.0% 65.5%
3288521 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.65 60.0 5.04e-01 100.0% 87.5%
3718987 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 59.0 5.02e-01 100.0% 71.3%
3181663 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.64 59.0 5.04e-01 100.0% 86.3%
4928664 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.64 57.0 4.00e-01 98.3% 93.9%
3711362 2004.1.1.296 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.62 56.0 4.59e-01 100.0% 60.0%
3320317 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 53.0 4.79e-01 100.0% 72.7%
3263808 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.57 52.0 4.14e-01 100.0% 67.2%
134492 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.56 42.0 4.11e-01 93.4% 72.7%
3947522 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.56 40.0 3.96e-01 93.4% 70.0%
135842 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.56 41.0 4.20e-01 93.4% 81.7%
3388140 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.56 41.0 4.06e-01 95.9% 72.3%
1095677 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 41.0 3.98e-01 93.4% 69.3%
4034184 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 42.0 4.11e-01 98.3% 74.6%
3969418 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.55 40.0 3.95e-01 93.4% 71.5%
3386692 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 41.0 4.03e-01 95.9% 73.8%
3980630 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.54 40.0 4.00e-01 97.5% 74.6%
4945561 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.54 46.0 3.49e-01 100.0% 39.0%
3512787 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.54 40.0 3.93e-01 97.5% 71.9%
3968601 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.53 40.0 3.95e-01 97.5% 74.6%
3265084 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 47.0 3.66e-01 100.0% 73.1%
3966785 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.53 41.0 3.98e-01 95.9% 74.1%
2770097 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.53 36.0 3.75e-01 98.3% 75.4%
3988213 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.52 39.0 3.75e-01 97.5% 66.9%
4474529 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.52 40.0 3.98e-01 97.5% 77.7%
4108951 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.52 36.0 3.82e-01 98.3% 81.0%
3926318 2004.1.1.202 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.51 45.0 3.72e-01 100.0% 77.8%
4945369 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 47.0 3.83e-01 100.0% 59.5%
9934 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.50 44.0 4.27e-01 100.0% 97.1%
3977337 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.50 38.0 3.71e-01 97.5% 72.6%
D2 medium residues 38-132
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 74.2 1.10e-20 87.4% 97.6%
D3 medium residues 145-185
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.23e-01 92.7% 100.0%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 54.0 3.86e-01 100.0% 28.9%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.66e-01 100.0% 66.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.51e-01 100.0% 58.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.24e-01 100.0% 57.5%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 40.0 3.74e-01 75.6% 53.7%
4dgwB01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.60 48.0 4.57e-01 100.0% 78.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.19e-01 100.0% 60.5%
3t5qG01 1.10.150.550 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain 0.54 36.0 2.74e-01 70.7% 71.2%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.51 34.0 3.18e-01 73.2% 50.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280314 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 63.0 5.72e-01 100.0% 78.2%
2570089 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.54 41.0 3.89e-01 100.0% 98.3%