replication-associated_protein

Euk-Vir

Avon-Heathcote_Estuary_associated_circular_virus_14

replication-associated_protein__YP_009126915__Avon-Heathcote_Estuary_associated_circular_virus_14__1618237

Identity

74.9 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Avon-Heathcote_Estuary_associated_circular_virus_14

TaxID: 1618237

View cluster (107 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-114

PDB

D2 high residues 132-174

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ptfB02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.56	48.0	4.42e-01	100.0%	94.7%
2xuaA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.55	42.0	2.70e-01	95.3%	15.8%
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.51	36.0	2.68e-01	76.7%	63.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3618122	2004.1.1.55 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase	0.85	73.0	4.72e-01	100.0%	22.1%
4000360	101.1.1.35 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq	0.68	56.0	5.32e-01	100.0%	85.5%

D3 high residues 183-305

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	44.2	3.20e-11	69.1%	99.1%