←Back to structures
replication-associated_protein
Euk-VirCtenophore-associated_circular_virus_2_Viruses.
replication-associated_protein__YP_009226563__Ctenophore-associated_circular_virus_2_Viruses.__X
Identity
- Accession:
- YP_009226563 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
90.2
mean pLDDT
Cluster
View cluster (111 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-100
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 63.8 | 2.00e-17 | 91.7% | 98.8% |
D2
high
residues 107-156
Domain cluster:
rep: putative_replication_initiation_protein,_partial__YP_009163899__Aiptasia_sp._sea_anemone_associated_circular_virus__1692242__D98-144
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.74 | 62.0 | 4.46e-01 | 94.0% | 85.2% |
| 1ku2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 62.0 | 5.96e-01 | 96.0% | 96.5% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.71 | 62.0 | 5.60e-01 | 100.0% | 100.0% |
| 1jhfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 60.0 | 5.43e-01 | 98.0% | 94.2% |
| 6muwB00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.67 | 57.0 | 3.70e-01 | 98.0% | 59.8% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.65 | 54.0 | 4.46e-01 | 100.0% | 69.3% |
| 1kqpA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 49.0 | 3.19e-01 | 100.0% | 18.1% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.57 | 46.0 | 3.42e-01 | 100.0% | 42.2% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 2.63e-01 | 90.0% | 13.5% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.71e-01 | 88.0% | 68.9% |
| 2cdqA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 43.0 | 2.99e-01 | 100.0% | 34.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4446406 | 101.1.1.376 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Drc1-Sld2 | 0.82 | 61.0 | 6.13e-01 | 80.0% | 88.0% |
| 4026959 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.79 | 60.0 | 3.60e-01 | 82.0% | 13.6% |
| 3482082 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.79 | 58.0 | 5.15e-01 | 78.0% | 61.4% |
| 2807554 | 101.1.1.27 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DsrC | 0.78 | 68.0 | 5.33e-01 | 98.0% | 62.1% |
| 3299379 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 58.0 | 4.10e-01 | 82.0% | 30.0% |
| 4657866 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.74 | 64.0 | 5.51e-01 | 98.0% | 81.2% |
| 4562263 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.74 | 50.0 | 3.03e-01 | 70.0% | 11.8% |
| 3280166 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.74 | 57.0 | 5.38e-01 | 84.0% | 75.0% |
| 4058877 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.73 | 63.0 | 5.68e-01 | 98.0% | 94.3% |
| 4230066 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.72 | 62.0 | 5.14e-01 | 98.0% | 71.1% |
| 4962879 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.72 | 61.0 | 4.36e-01 | 100.0% | 38.7% |
| 4059092 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.72 | 62.0 | 5.32e-01 | 98.0% | 81.2% |
| 4280723 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.72 | 61.0 | 5.02e-01 | 98.0% | 68.4% |
| 4369472 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.69 | 59.0 | 4.70e-01 | 98.0% | 61.9% |
| 4946450 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 56.0 | 4.82e-01 | 100.0% | 93.2% |
| 4945073 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 56.0 | 4.78e-01 | 100.0% | 91.1% |
| 3809378 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.60 | 48.0 | 4.47e-01 | 100.0% | 95.7% |
| 3715233 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.59 | 42.0 | 3.51e-01 | 76.0% | 100.0% |
| 5067012 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 47.0 | 3.44e-01 | 100.0% | 81.5% |
D3
high
residues 169-301
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764