replication-associated_protein

Euk-Vir

Farfantepenaeus_duorarum_circovirus

replication-associated_protein__YP_009551455__Farfantepenaeus_duorarum_circovirus__1380894

Identity

78.8 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Circovirus› Farfantepenaeus_duorarum_circovirus

TaxID: 1380894

View cluster (114 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103

PDB

D2 high residues 162-285

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	31.6	2.80e-07	72.6%	99.1%

D3 medium residues 113-153

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1o82A00	1.20.225.10	Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48	0.70	59.0	5.03e-01	100.0%	72.9%
7s03A01	1.10.10.1450	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.67	54.0	5.19e-01	100.0%	90.0%
6tkvA01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.66	43.0	3.65e-01	73.2%	41.2%
3ne5B04	6.10.140.730	Special › Helix non-globular › Helix Hairpins ›	0.63	51.0	4.83e-01	92.7%	84.3%
3c8zA02	1.20.120.640	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.60	45.0	3.89e-01	97.6%	65.1%
2ld7B00	1.20.1160.11	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix	0.60	44.0	3.79e-01	87.8%	57.3%
5w6lA01	3.40.50.11550	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	48.0	3.06e-01	100.0%	18.1%
1vwxr00	3.30.390.110	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 ›	0.57	45.0	3.40e-01	100.0%	60.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3568862	101.1.1.24 ↗	alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N	0.78	61.0	5.17e-01	92.7%	53.8%
3410877	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.70	62.0	5.19e-01	100.0%	58.6%
5028706	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.63	46.0	3.31e-01	87.8%	81.4%