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replication-associated_protein

Euk-Vir

Fly_associated_circular_virus_5_Viruses.

replication-associated_protein__YP_009551468__Fly_associated_circular_virus_5_Viruses.__X

Identity

Accession:
YP_009551468 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

84.5 mean pLDDT

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-284
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 51.6 1.70e-13 73.8% 98.1%
D2 medium residues 10-103
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 69.3 3.70e-19 92.5% 97.6%
D3 medium residues 109-154
PDB
Domain cluster: rep: replication-associated_protein__YP_009001751__Dragonfly_larvae_associated_circular_virus-8_Viruses.__X__D116-156
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 62.0 4.78e-01 97.8% 50.5%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.74 62.0 5.14e-01 100.0% 68.5%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 56.0 5.44e-01 87.0% 76.5%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 56.0 5.34e-01 87.0% 72.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 59.0 5.61e-01 97.8% 85.7%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 58.0 4.53e-01 100.0% 92.2%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.28e-01 95.7% 91.4%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 51.0 5.06e-01 89.1% 94.0%
2jpcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.97e-01 93.5% 95.1%
1yrtA03 1.10.150.920 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 47.0 4.72e-01 78.3% 75.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.65 52.0 3.83e-01 91.3% 83.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.90e-01 91.3% 91.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.52e-01 95.7% 61.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.63e-01 95.7% 70.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.54e-01 93.5% 70.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.30e-01 82.6% 62.5%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.24e-01 93.5% 59.8%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 48.0 4.06e-01 95.7% 100.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.35e-01 95.7% 64.5%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 50.0 3.70e-01 97.8% 33.8%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 41.0 2.62e-01 71.7% 13.3%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.61 49.0 3.60e-01 100.0% 35.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 43.0 3.80e-01 78.3% 49.3%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.58 44.0 4.12e-01 95.7% 77.6%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 46.0 3.89e-01 97.8% 60.7%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.57 46.0 3.62e-01 100.0% 68.4%
2ys8A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.55 43.0 3.72e-01 100.0% 71.1%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.55 38.0 3.45e-01 73.9% 67.2%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.52 38.0 3.55e-01 82.6% 77.0%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.51 45.0 4.00e-01 95.7% 87.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945210 101.1.6.25 ↗ alpha arrays › HTH › HTH › TrpR › DUF2857 0.78 63.0 6.69e-01 93.5% 100.0%
1695424 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 64.0 5.57e-01 100.0% 61.4%
4973961 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 4.90e-01 100.0% 46.3%
3837930 101.1.1.347 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase 0.74 63.0 5.96e-01 100.0% 81.8%
4173465 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 62.0 5.89e-01 100.0% 81.8%
3949663 101.1.1.307 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF3071 0.72 55.0 5.74e-01 89.1% 100.0%
3257722 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.72 58.0 4.85e-01 95.7% 69.4%
4316691 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.02e-01 84.8% 81.7%
4973199 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.70 60.0 5.53e-01 97.8% 80.0%
3603167 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.70 60.0 5.38e-01 97.8% 70.8%
4156355 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.70 59.0 4.13e-01 100.0% 88.1%
3954237 532.2.1.16 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.69 56.0 4.76e-01 93.5% 67.5%
3287759 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 58.0 5.20e-01 95.7% 81.5%
4492035 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 54.0 4.83e-01 93.5% 74.3%
3975610 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 55.0 4.86e-01 95.7% 74.3%
3290024 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 55.0 4.64e-01 95.7% 65.0%
3990848 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 56.0 5.33e-01 100.0% 96.4%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 53.0 4.68e-01 93.5% 78.6%
4099504 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.65 56.0 5.14e-01 97.8% 93.3%
3971154 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 54.0 4.75e-01 95.7% 75.7%
3288310 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 54.0 4.77e-01 95.7% 75.7%
3968151 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 53.0 4.43e-01 95.7% 62.4%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 53.0 4.43e-01 95.7% 58.8%
3968864 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 53.0 4.60e-01 95.7% 65.3%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.64 52.0 3.61e-01 100.0% 31.4%
4102570 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 5.07e-01 97.8% 92.0%
3464621 2484.1.1.131 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_21 0.63 49.0 3.04e-01 93.5% 98.8%
4153644 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.62 48.0 4.55e-01 93.5% 81.7%
2332937 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 50.0 4.39e-01 95.7% 66.2%
5010328 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.57e-01 95.7% 87.3%
4997129 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 48.0 4.75e-01 97.8% 88.0%