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replication-associated_protein

Euk-Vir

Odonata-associated_circular_virus-15_Viruses.

replication-associated_protein__YP_009551674__Odonata-associated_circular_virus-15_Viruses.__X

Identity

Accession:
YP_009551674 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

84.9 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-112
PDB
Domain cluster: rep: RepA__YP_009252354__Faeces_associated_gemycircularvirus_20__1843740__D6-101
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 85.8 2.90e-24 97.9% 88.5%
D2 high residues 123-169
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x6vB03 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 48.0 3.08e-01 100.0% 15.9%
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.39e-01 100.0% 59.2%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.64 55.0 4.18e-01 100.0% 50.0%
3fwbA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 45.0 3.76e-01 74.5% 80.5%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.62 45.0 3.57e-01 85.1% 37.0%
1pujA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.62 49.0 3.96e-01 89.4% 53.8%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.03e-01 100.0% 49.4%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.60 50.0 3.90e-01 100.0% 83.5%
1m4uA02 1.10.287.520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 43.0 4.06e-01 85.1% 62.7%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 44.0 2.96e-01 83.0% 23.4%
1y1aA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 45.0 3.76e-01 87.2% 60.9%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.57 44.0 3.19e-01 89.4% 87.7%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.57 46.0 4.13e-01 97.9% 75.3%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 41.0 3.29e-01 83.0% 37.8%
3mfiA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 47.0 4.13e-01 97.9% 84.2%
1navA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.57 46.0 3.02e-01 100.0% 27.3%
2h8pC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 3.79e-01 80.9% 66.7%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 44.0 3.49e-01 100.0% 42.7%
5a62A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.72e-01 95.7% 32.4%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.53 44.0 3.56e-01 95.7% 81.6%
3acxA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 42.0 2.70e-01 100.0% 47.5%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.52 41.0 3.47e-01 89.4% 50.6%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 43.0 3.45e-01 93.6% 48.5%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.52 42.0 2.96e-01 95.7% 48.0%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.52 41.0 3.15e-01 89.4% 82.3%
7vpjA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 40.0 2.76e-01 93.6% 33.7%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.51 38.0 3.15e-01 97.9% 55.3%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 43.0 2.61e-01 97.9% 98.7%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.50 43.0 4.07e-01 100.0% 86.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484831 1089.1.1.1 ↗ a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.70 61.0 5.27e-01 100.0% 64.0%
3404542 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.68 51.0 4.24e-01 97.9% 47.5%
3496406 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 4.17e-01 100.0% 57.8%
4423474 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.66 50.0 3.80e-01 83.0% 53.9%
3781238 604.5.1.31 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.66 49.0 2.96e-01 83.0% 12.4%
3606516 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.88e-01 100.0% 76.0%
3592236 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.66 56.0 4.70e-01 100.0% 64.7%
3838702 107.1.1.1 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C 0.65 55.0 4.43e-01 100.0% 81.6%
4137678 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 55.0 5.11e-01 100.0% 86.7%
3964225 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.60 40.0 3.62e-01 93.6% 50.8%
4633797 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.59 46.0 3.99e-01 91.5% 56.2%
3314414 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 44.0 3.62e-01 85.1% 44.4%
3366724 605.4.1.16 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › NEPRO_N 0.58 46.0 3.46e-01 89.4% 59.2%
3937970 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.58 50.0 3.35e-01 100.0% 68.9%
3229806 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.58 44.0 3.38e-01 97.9% 35.7%
3595933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.82e-01 100.0% 84.4%
4984959 3758.1.1.113 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook 0.57 44.0 2.72e-01 91.5% 13.6%
3164685 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 38.0 2.77e-01 100.0% 22.8%
4013085 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.57 45.0 2.83e-01 97.9% 16.2%
4468656 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.56 44.0 3.21e-01 85.1% 76.0%
3967708 179.1.1.1 ↗ alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.56 43.0 3.74e-01 97.9% 54.4%
5013136 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 41.0 2.67e-01 93.6% 15.7%
3607337 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 41.0 3.44e-01 83.0% 92.2%
3631135 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.55 39.0 3.62e-01 83.0% 74.3%
4083584 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.53 39.0 2.85e-01 83.0% 26.0%
3254770 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.53 46.0 3.53e-01 97.9% 62.9%
5076415 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.52 43.0 2.61e-01 97.9% 16.5%
3608091 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.52 40.0 2.76e-01 87.2% 84.6%
4412399 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 38.0 2.96e-01 87.2% 73.0%
D3 high residues 172-307
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764