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replication-associated_protein

Euk-Vir

Odonata-associated_circular_virus-2_Viruses.

replication-associated_protein__YP_009552095__Odonata-associated_circular_virus-2_Viruses.__X

Identity

Accession:
YP_009552095 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

87.2 mean pLDDT

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 166-277
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 72.0 5.80e-01 100.0% 57.4%
5m7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 66.0 5.79e-01 100.0% 83.4%
1g41A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 67.0 5.52e-01 100.0% 73.6%
2bjvA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 66.0 5.84e-01 100.0% 84.3%
4zpxA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 66.0 5.16e-01 100.0% 82.0%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 66.0 4.81e-01 100.0% 46.4%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 66.0 5.79e-01 100.0% 72.2%
3vkhB09 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 65.0 5.48e-01 100.0% 80.3%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 64.0 4.49e-01 100.0% 46.2%
1fnnA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 65.0 5.55e-01 100.0% 82.8%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 64.0 4.51e-01 100.0% 42.3%
7jgsG01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 65.0 5.67e-01 100.0% 86.7%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 64.0 5.81e-01 100.0% 85.9%
3nbxX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 63.0 5.15e-01 100.0% 60.3%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 5.20e-01 100.0% 84.4%
1l8qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 64.0 5.54e-01 100.0% 75.8%
3vkgA10 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 5.20e-01 100.0% 78.6%
3n70A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 5.81e-01 100.0% 81.0%
2qgzA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 63.0 5.39e-01 100.0% 68.9%
3t15A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 63.0 5.62e-01 100.0% 74.2%
6qelJ01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 63.0 5.30e-01 100.0% 69.7%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 4.39e-01 100.0% 44.0%
5fhgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 5.06e-01 100.0% 80.8%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 59.0 5.18e-01 100.0% 80.2%
2db3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 60.0 4.53e-01 100.0% 67.1%
5gvrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 59.0 4.58e-01 100.0% 76.1%
8kcaB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 58.0 5.00e-01 100.0% 90.1%
6mfvC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 59.0 5.35e-01 100.0% 87.8%
4q48A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 58.0 4.74e-01 100.0% 82.0%
6yhrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 56.0 4.69e-01 100.0% 83.5%
7xpcA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 56.0 4.01e-01 100.0% 51.2%
2az4A02 3.40.50.10710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase 0.61 45.0 4.04e-01 76.8% 98.1%
6b4kB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 4.81e-01 100.0% 90.6%
2p6nA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 4.88e-01 100.0% 93.8%
1hv8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 4.96e-01 99.1% 98.7%
3mwyW04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 52.0 3.94e-01 95.5% 98.1%
4b3fX03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 54.0 4.44e-01 100.0% 72.3%
1c4oA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 4.53e-01 96.4% 84.0%
1sq5C00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 54.0 3.96e-01 100.0% 45.6%
2xzlA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 53.0 4.33e-01 100.0% 73.1%
2o57A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 50.0 4.44e-01 93.8% 96.4%
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 4.23e-01 93.8% 82.4%
4krgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 3.89e-01 94.6% 71.9%
1ve3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 4.06e-01 94.6% 84.0%
1dekA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 4.58e-01 100.0% 82.2%
5eanA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.21e-01 100.0% 72.9%
3ajeA02 3.40.50.11030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain 0.57 46.0 4.61e-01 100.0% 85.3%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 4.09e-01 92.9% 89.7%
3e7pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.74e-01 95.5% 67.2%
5dmhB02 3.40.980.20 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain 0.55 49.0 4.20e-01 100.0% 82.2%
1yzyA02 3.40.980.20 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain 0.54 47.0 4.12e-01 100.0% 83.1%
4w7sA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.50e-01 99.1% 60.4%
1a1vA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 4.03e-01 89.3% 90.4%
2ftpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 45.0 3.40e-01 100.0% 75.7%
1ny1A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.50 43.0 3.46e-01 96.4% 67.1%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618122 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.87 83.0 6.69e-01 100.0% 59.5%
4158189 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.83 77.0 6.78e-01 100.0% 75.6%
4032150 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.76 70.0 5.80e-01 100.0% 70.5%
3976110 2004.1.1.641 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF6079 0.76 71.0 5.09e-01 100.0% 80.0%
4116942 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.75 68.0 4.73e-01 100.0% 40.3%
4324606 2004.1.1.155 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 0.75 70.0 5.40e-01 100.0% 59.6%
4009589 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.75 68.0 5.60e-01 100.0% 74.0%
4540715 2004.1.1.641 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF6079 0.74 69.0 4.86e-01 100.0% 83.4%
3837905 2004.1.1.292 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase 0.74 69.0 4.85e-01 100.0% 56.7%
3594982 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.74 69.0 5.13e-01 100.0% 53.1%
4275455 2004.1.1.258 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 0.74 68.0 4.76e-01 100.0% 82.1%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.74 69.0 4.99e-01 100.0% 49.1%
4102348 2004.1.1.493 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_2, AAA_5 0.74 68.0 4.76e-01 100.0% 82.1%
4021261 2004.1.1.292 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase 0.74 69.0 5.48e-01 100.0% 67.6%
4994590 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 68.0 5.44e-01 100.0% 63.8%
5022725 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 69.0 5.00e-01 100.0% 43.6%
4134121 2004.1.1.623 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, MCM, AAA_2, AAA_5 0.73 67.0 4.73e-01 100.0% 82.4%
4091103 2004.1.1.258 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 0.73 67.0 4.78e-01 100.0% 85.0%
4377664 2004.1.1.545 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2, AAA_5 0.73 67.0 4.79e-01 100.0% 81.3%
5012900 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.73 67.0 5.18e-01 100.0% 60.8%
5016962 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.73 67.0 5.11e-01 100.0% 58.8%
5004937 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.72 66.0 5.11e-01 100.0% 64.2%
4039355 2004.1.1.258 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 0.72 66.0 4.60e-01 100.0% 85.7%
2868779 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.72 65.0 5.55e-01 100.0% 77.1%
3494883 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.72 67.0 5.25e-01 100.0% 74.1%
None — 0.72 67.0 5.68e-01 100.0% 84.0%
4961268 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.72 67.0 5.32e-01 100.0% 73.8%
None — 0.72 67.0 5.24e-01 100.0% 70.0%
3602833 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.72 66.0 4.81e-01 100.0% 50.3%
4351475 2004.1.1.624 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 0.71 66.0 4.91e-01 100.0% 66.0%
4934143 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 65.0 4.91e-01 100.0% 53.5%
3414369 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.71 66.0 5.13e-01 100.0% 66.2%
4021329 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 66.0 5.37e-01 100.0% 76.4%
4944898 2004.1.1.1210 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_lid_2 0.71 65.0 4.92e-01 100.0% 68.6%
4927696 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.70 65.0 4.46e-01 100.0% 57.0%
3169723 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 65.0 5.26e-01 100.0% 86.8%
3166204 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.70 64.0 5.01e-01 100.0% 65.1%
4971994 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 64.0 4.91e-01 100.0% 70.0%
4985516 2004.1.1.1215 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cdc6_lid 0.70 65.0 4.80e-01 100.0% 54.5%
3968443 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.70 65.0 5.63e-01 100.0% 70.3%
4979462 2004.1.1.127 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TniB 0.70 65.0 5.30e-01 100.0% 77.9%
4591721 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.70 65.0 4.79e-01 100.0% 67.8%
4995867 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.70 64.0 5.09e-01 100.0% 69.1%
5011181 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.69 64.0 5.15e-01 100.0% 72.4%
3788548 138.1.1.35 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › AAA, Rad17 0.69 64.0 4.29e-01 100.0% 41.5%
4241558 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.69 64.0 5.22e-01 100.0% 64.5%
5003872 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.69 64.0 5.34e-01 100.0% 82.2%
None — 0.69 64.0 5.17e-01 100.0% 82.4%
3838423 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.69 64.0 5.48e-01 100.0% 73.5%
4027459 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 63.0 5.60e-01 100.0% 74.2%
2142336 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.69 63.0 5.56e-01 100.0% 72.7%
4670579 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.68 63.0 5.49e-01 100.0% 77.0%
4406063 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.68 63.0 5.33e-01 100.0% 71.7%
None — 0.68 62.0 5.34e-01 100.0% 81.8%
4177136 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.68 63.0 5.16e-01 100.0% 65.1%
4145615 2004.1.1.35 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.68 62.0 4.75e-01 100.0% 50.4%
3256493 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.68 63.0 5.53e-01 100.0% 74.4%
4943573 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.66 47.0 3.93e-01 73.2% 98.9%
3965613 2004.1.1.209 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activ_2 0.66 59.0 5.48e-01 100.0% 78.6%
4994963 247.1.1.53 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Beta-Casp 0.65 52.0 3.36e-01 84.8% 44.9%
3994511 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 59.0 5.07e-01 100.0% 64.0%
3607147 2004.1.1.210 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ERCC3_RAD25_C 0.65 59.0 4.50e-01 100.0% 75.0%
3265084 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.63 58.0 4.30e-01 100.0% 80.7%
3739648 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.62 57.0 4.50e-01 100.0% 69.8%
3253623 2004.1.1.296 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind 0.62 56.0 4.57e-01 100.0% 66.3%
5011216 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.61 57.0 4.94e-01 100.0% 81.8%
4375210 2003.1.5.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS 0.61 52.0 3.90e-01 94.6% 69.8%
3960235 2003.1.5.152 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 0.60 52.0 3.80e-01 94.6% 62.6%
4029342 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 54.0 4.74e-01 100.0% 88.8%
3404782 2004.1.1.240 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C 0.58 52.0 4.39e-01 100.0% 90.8%
4888760 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 42.0 4.05e-01 75.0% 80.3%
4029484 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.58 52.0 3.79e-01 100.0% 53.3%
5062968 2003.1.1.384 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Beta-Casp 0.55 40.0 3.48e-01 77.7% 83.3%
4162604 7589.1.1.2 ↗ a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.54 48.0 4.17e-01 100.0% 85.5%
3933179 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.54 39.0 3.21e-01 75.9% 87.4%
4551833 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 37.0 3.60e-01 90.2% 65.4%
D2 medium residues 5-102
PDB
Domain cluster: rep: replication-associated_protein__YP_009552054__Stipagrostis_associaed_virus_Viruses.__X__D4-105
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 65.7 5.10e-18 100.0% 88.5%
D3 medium residues 110-149
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.31e-01 97.5% 61.8%
2ecbA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 51.0 4.86e-01 100.0% 90.2%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 51.0 4.86e-01 90.0% 91.7%
3qqaA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 53.0 4.76e-01 100.0% 89.8%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.14e-01 100.0% 62.8%
2r6fA02 1.20.1580.10 Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain 0.62 42.0 2.88e-01 72.5% 79.4%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 48.0 4.56e-01 100.0% 87.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 48.0 4.23e-01 100.0% 66.2%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.24e-01 100.0% 73.5%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 4.38e-01 100.0% 72.1%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 46.0 4.43e-01 100.0% 88.7%
1u0jA01 1.10.10.950 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 46.0 4.38e-01 97.5% 98.2%
3eapD00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.56 40.0 2.52e-01 80.0% 14.6%
4na1B02 1.10.1240.100 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.54 39.0 3.19e-01 100.0% 36.8%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 41.0 2.68e-01 87.5% 19.7%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.52 43.0 3.55e-01 100.0% 85.2%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 37.0 2.51e-01 92.5% 41.1%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.50 41.0 2.50e-01 97.5% 14.6%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219863 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 4.96e-01 100.0% 90.9%
4255549 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 56.0 4.88e-01 100.0% 75.4%
3219861 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 53.0 4.94e-01 100.0% 90.9%
3299231 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 56.0 4.99e-01 100.0% 81.7%
3997838 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 55.0 4.82e-01 100.0% 75.4%
3991598 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 55.0 4.50e-01 100.0% 61.3%
3996572 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 47.0 4.65e-01 85.0% 93.3%
3219867 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 4.32e-01 100.0% 58.8%
3582723 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 50.0 4.42e-01 100.0% 71.4%
3869797 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 49.0 4.38e-01 100.0% 70.0%
3477895 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 50.0 4.33e-01 100.0% 66.7%
3759994 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.64e-01 100.0% 87.3%
3240028 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.57e-01 100.0% 90.9%
3933833 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.34e-01 100.0% 71.4%
3301164 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.54e-01 100.0% 78.3%
3886164 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.74e-01 100.0% 96.0%
3243458 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.31e-01 100.0% 70.0%
3571378 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.73e-01 97.5% 100.0%
3859184 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 48.0 4.51e-01 100.0% 83.3%
3874870 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.17e-01 100.0% 62.5%
3470506 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.38e-01 100.0% 76.9%
3507888 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 52.0 4.38e-01 100.0% 65.3%
3517002 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.51e-01 100.0% 78.3%
3229129 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 49.0 4.44e-01 100.0% 75.4%
3769368 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.22e-01 100.0% 66.7%
3874841 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 48.0 4.39e-01 100.0% 76.9%
3842636 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.30e-01 100.0% 70.0%
3244509 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 3.79e-01 100.0% 51.8%
3392498 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.36e-01 100.0% 76.9%
3218791 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.22e-01 100.0% 68.5%
3480451 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.13e-01 100.0% 62.5%
3244955 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 4.32e-01 100.0% 72.3%
4566385 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.40e-01 100.0% 76.9%
3478272 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 3.81e-01 100.0% 47.6%
3894143 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.12e-01 100.0% 61.3%
3818566 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 3.96e-01 100.0% 55.6%
3881453 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 50.0 4.31e-01 97.5% 55.7%
163004 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.23e-01 100.0% 66.2%
5047271 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.62 49.0 3.04e-01 97.5% 35.7%
None — 0.62 48.0 4.11e-01 100.0% 62.5%
3768463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.44e-01 100.0% 80.0%
3897457 101.1.2.360 ↗ alpha arrays › HTH › HTH › winged helix domain › Homeodomain 0.62 48.0 4.25e-01 100.0% 68.6%
3790416 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 4.17e-01 100.0% 66.7%
3270649 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.45e-01 100.0% 76.7%
None — 0.62 47.0 4.32e-01 100.0% 76.9%
None — 0.62 47.0 4.32e-01 100.0% 76.9%
3847051 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 49.0 4.05e-01 100.0% 57.6%
3783785 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.25e-01 100.0% 68.6%
3398554 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 3.66e-01 100.0% 41.7%
4201481 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 48.0 4.47e-01 100.0% 81.7%
3870535 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 4.32e-01 100.0% 75.4%
3525151 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.87e-01 97.5% 86.7%
3219862 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.35e-01 100.0% 75.4%
3538312 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.60e-01 100.0% 92.0%
3216569 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.47e-01 100.0% 87.3%
3886591 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.05e-01 100.0% 62.5%
4275568 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.18e-01 100.0% 71.4%
3529609 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 46.0 4.08e-01 100.0% 66.7%
3936240 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 46.0 4.23e-01 100.0% 73.8%
3523991 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.19e-01 100.0% 71.4%
3217696 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.32e-01 100.0% 63.1%
3757972 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 46.0 3.83e-01 100.0% 53.2%
3226835 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 47.0 4.28e-01 100.0% 76.9%
3495504 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 47.0 4.55e-01 100.0% 92.0%
3579029 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 45.0 3.88e-01 92.5% 53.8%
3539051 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 46.0 4.23e-01 100.0% 76.9%
3250770 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 45.0 4.44e-01 100.0% 94.0%
3219860 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 45.0 4.20e-01 100.0% 93.3%
4599923 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.07e-01 100.0% 71.4%
3694221 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.59 48.0 4.37e-01 100.0% 86.7%
3991207 101.1.1.400 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain, PAX 0.59 46.0 3.20e-01 100.0% 24.1%
3219864 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 43.0 4.03e-01 92.5% 70.0%
4213222 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 45.0 4.13e-01 100.0% 68.8%
3484360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 47.0 4.10e-01 100.0% 58.6%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.57 43.0 3.99e-01 100.0% 67.7%
3528634 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.55 43.0 3.63e-01 100.0% 51.8%