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replication-associated_protein

Euk-Vir

Odonata-associated_circular_virus-11_Viruses.

replication-associated_protein__YP_009552806__Odonata-associated_circular_virus-11_Viruses.__X

Identity

Accession:
YP_009552806 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

79.9 mean pLDDT

Cluster

View cluster (107 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 155-284
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 47.5 3.10e-12 69.2% 98.1%
D2 medium residues 8-96
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 49.7 4.90e-13 91.0% 98.8%
D3 medium residues 105-146
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 60.0 5.64e-01 88.1% 70.6%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.75 63.0 5.04e-01 100.0% 61.8%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 63.0 4.71e-01 100.0% 49.5%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 56.0 5.21e-01 88.1% 66.7%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 59.0 5.66e-01 97.6% 96.0%
4xviA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.69 57.0 4.05e-01 100.0% 31.2%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.69 56.0 5.03e-01 88.1% 75.0%
2jpcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.14e-01 100.0% 93.4%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 57.0 5.27e-01 100.0% 80.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 4.56e-01 100.0% 58.6%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.67 55.0 3.56e-01 100.0% 31.2%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.21e-01 100.0% 91.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 4.70e-01 100.0% 58.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 4.76e-01 100.0% 61.8%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 52.0 4.93e-01 88.1% 90.0%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 49.0 3.85e-01 92.9% 55.4%
7eqeB01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 51.0 3.57e-01 100.0% 61.5%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 52.0 3.76e-01 100.0% 28.9%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.17e-01 100.0% 82.4%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.56 45.0 3.64e-01 97.6% 97.8%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 39.0 3.45e-01 83.3% 47.9%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.52 36.0 3.30e-01 78.6% 52.5%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.75e-01 100.0% 25.8%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 37.0 3.20e-01 88.1% 70.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071215 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 67.0 6.22e-01 100.0% 76.4%
3290277 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 66.0 6.28e-01 100.0% 86.0%
4281782 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 66.0 5.49e-01 100.0% 56.0%
5080070 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 63.0 5.81e-01 95.2% 72.7%
3945210 101.1.6.25 ↗ alpha arrays › HTH › HTH › TrpR › DUF2857 0.75 59.0 6.07e-01 100.0% 95.0%
3947236 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.75 62.0 5.82e-01 97.6% 94.4%
5030781 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 6.11e-01 92.9% 95.0%
3932988 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 66.0 6.01e-01 100.0% 76.4%
3410877 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.35e-01 97.6% 58.6%
3280314 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 65.0 5.95e-01 100.0% 76.4%
3837930 101.1.1.347 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase 0.73 60.0 5.57e-01 100.0% 72.7%
3631982 2007.2.3.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase3 0.73 62.0 3.83e-01 100.0% 31.1%
3288934 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.73 60.0 5.50e-01 100.0% 91.7%
3589854 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 61.0 5.40e-01 100.0% 69.2%
3949663 101.1.1.307 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF3071 0.72 58.0 5.91e-01 95.2% 97.5%
3945143 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 59.0 5.49e-01 100.0% 72.7%
3514120 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.72 61.0 5.49e-01 100.0% 70.0%
1695424 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 57.0 4.94e-01 100.0% 55.7%
4332912 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 59.0 5.60e-01 100.0% 78.0%
3589502 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.71 61.0 5.79e-01 100.0% 84.0%
4224167 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.71 57.0 5.26e-01 97.6% 75.0%
4680413 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 60.0 5.31e-01 100.0% 64.6%
3590732 101.1.1.364 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.71 57.0 5.58e-01 95.2% 84.4%
3946608 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 61.0 5.15e-01 100.0% 72.9%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.70 55.0 5.46e-01 95.2% 84.4%
4173465 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 55.0 5.13e-01 100.0% 72.7%
3968151 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 58.0 4.70e-01 100.0% 60.0%
4153644 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 55.0 5.06e-01 100.0% 81.7%
4608916 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 58.0 5.37e-01 100.0% 76.4%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 58.0 4.96e-01 100.0% 81.4%
2761 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 56.0 4.56e-01 100.0% 58.6%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 58.0 4.64e-01 100.0% 58.8%
5010328 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 4.97e-01 97.6% 80.0%
2332937 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 57.0 4.80e-01 100.0% 63.5%
4156355 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 48.0 3.43e-01 100.0% 60.0%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.60 47.0 3.28e-01 100.0% 28.6%
3914408 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 47.0 3.76e-01 97.6% 47.5%
5045542 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.54 40.0 2.81e-01 100.0% 81.5%
5026098 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.53 44.0 2.90e-01 100.0% 80.0%