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replication-associated_protein

Euk-Vir

Lolium_perenne-associated_virus_Viruses.

replication-associated_protein__YP_009553245__Lolium_perenne-associated_virus_Viruses.__X

Identity

Accession:
YP_009553245 ↗
Protein ID:
replication-associated_protein
Kingdom:
euk

Quality

84.0 mean pLDDT

Cluster

View cluster (491 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-102
PDB
Domain cluster: rep: replication-associated_protein__YP_009552054__Stipagrostis_associaed_virus_Viruses.__X__D4-105
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 41.4 1.70e-10 100.0% 91.1%
D2 high residues 113-156
PDB
Domain cluster: rep: replication_associated_protein__YP_009109715__Faeces_associated_gemycircularvirus_12__1391027__D123-167
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08283.17 best Gemini_AL1_M 29.6 8.50e-07 100.0% 39.2%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.70 56.0 4.67e-01 90.9% 72.5%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.69 57.0 3.68e-01 90.9% 42.2%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.69 56.0 3.82e-01 100.0% 42.9%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.22e-01 100.0% 52.0%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.10e-01 97.7% 74.7%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.61 51.0 3.37e-01 100.0% 30.5%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.61 45.0 4.03e-01 84.1% 56.7%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.21e-01 93.2% 60.3%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.60 48.0 3.69e-01 100.0% 46.0%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.59 48.0 3.76e-01 95.5% 41.6%
5my3A00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.58 43.0 2.95e-01 93.2% 45.6%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 47.0 4.44e-01 100.0% 96.6%
1lf6A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 43.0 2.61e-01 100.0% 21.9%
2f46A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 46.0 3.30e-01 100.0% 35.2%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 45.0 4.06e-01 93.2% 90.3%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.54 41.0 3.76e-01 97.7% 59.2%
2heuA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 44.0 2.94e-01 100.0% 78.0%
2yjgA01 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.54 45.0 3.03e-01 95.5% 58.4%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.54 40.0 3.51e-01 97.7% 65.2%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.55e-01 97.7% 75.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719708 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 62.0 4.62e-01 97.7% 36.5%
3480380 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.71 59.0 4.47e-01 97.7% 38.2%
3737690 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.69 57.0 4.41e-01 97.7% 40.0%
3782008 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.69 55.0 4.91e-01 90.9% 75.4%
3740124 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.69 55.0 5.14e-01 90.9% 89.1%
3399164 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.38e-01 97.7% 86.7%
3783806 592.1.1.2 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI 0.67 55.0 4.26e-01 97.7% 40.0%
3591380 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 53.0 3.30e-01 100.0% 18.2%
4099048 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.65 54.0 4.43e-01 100.0% 68.9%
3526457 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.63 52.0 4.42e-01 100.0% 81.2%
3992442 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.63 52.0 4.36e-01 100.0% 55.3%
4019762 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.62 50.0 4.24e-01 97.7% 77.6%
4939370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.96e-01 97.7% 50.0%
3631439 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.62 51.0 4.11e-01 97.7% 45.3%
3342850 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.61 52.0 4.41e-01 97.7% 57.3%
3406651 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.61 49.0 4.26e-01 95.5% 56.0%
5048562 2500.1.1.4 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › DUF711 0.59 49.0 2.88e-01 100.0% 10.4%
3468254 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.58 48.0 4.25e-01 100.0% 64.3%
D3 high residues 175-298
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283