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replication-associated_protein
Euk-VirEclipta_yellow_vein_alphasatellite
replication-associated_protein__YP_010086775__Eclipta_yellow_vein_alphasatellite__2030126
Identity
- Accession:
- YP_010086775 ↗
- Protein ID:
- replication-associated_protein
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Cluster
View cluster (111 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 152-287
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 41.3 | 2.70e-10 | 72.1% | 98.1% |
D2
medium
residues 5-22_24-66_69-94_96-98
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 86.7 | 1.40e-24 | 88.9% | 96.3% |
D3
medium
residues 107-141
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pn5A09 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 58.0 | 3.42e-01 | 100.0% | 19.6% |
| 3zm8A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 53.0 | 3.10e-01 | 100.0% | 22.1% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 48.0 | 4.39e-01 | 100.0% | 66.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3424523 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.72 | 60.0 | 4.47e-01 | 100.0% | 75.8% |
| 3896510 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.68 | 60.0 | 4.03e-01 | 100.0% | 30.4% |
| 3542413 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.66 | 58.0 | 3.89e-01 | 100.0% | 44.1% |
| 3838743 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.63 | 49.0 | 3.10e-01 | 100.0% | 26.8% |
| 3931316 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.62 | 42.0 | 4.18e-01 | 74.3% | 65.0% |