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replication-association_protein
Euk-VirHuman_stool-associated_circular_virus_NG13
replication-association_protein__YP_009506283__Human_stool-associated_circular_virus_NG13__743300
Identity
- Accession:
- YP_009506283 ↗
- Protein ID:
- replication-association_protein
- Kingdom:
- euk
Quality
84.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Circovirus›
Human_stool-associated_circular_virus_NG13
TaxID: 743300
Cluster
View cluster (114 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 166-281
Domain cluster:
rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 58.5 | 1.10e-15 | 76.7% | 97.1% |
D2
medium
residues 12-106
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 97.1 | 8.30e-28 | 91.6% | 97.6% |
D3
medium
residues 115-157
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 57.0 | 5.14e-01 | 93.0% | 68.3% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 50.0 | 4.93e-01 | 86.0% | 100.0% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.65 | 51.0 | 4.43e-01 | 100.0% | 71.8% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.65 | 55.0 | 4.77e-01 | 97.7% | 63.2% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 47.0 | 4.76e-01 | 95.3% | 90.9% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 48.0 | 3.43e-01 | 97.7% | 33.7% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.62 | 47.0 | 3.95e-01 | 95.3% | 57.8% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 46.0 | 4.32e-01 | 93.0% | 87.9% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 39.0 | 3.85e-01 | 72.1% | 64.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 48.0 | 4.03e-01 | 100.0% | 77.8% |
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.54 | 43.0 | 3.58e-01 | 100.0% | 85.9% |