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replication-enhancer_protein
Euk-VirSida_mottle_Alagoas_virus
replication-enhancer_protein__YP_007438881__Sida_mottle_Alagoas_virus__1266995
Identity
- Accession:
- YP_007438881 ↗
- Protein ID:
- replication-enhancer_protein
- Kingdom:
- euk
Quality
84.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Sida_mottle_Alagoas_virus
TaxID: 1266995
Cluster
View cluster (386 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-129
Domain cluster:
rep: AC3__YP_009506535__Tomato_leaf_curl_New_Delhi_virus_4__2049944__D13-132
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01407.22 best | Gemini_AL3 | 168.6 | 6.50e-50 | 93.3% | 90.8% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 37.0 | 3.72e-01 | 98.3% | 51.7% |
| 4ccvA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 43.0 | 4.41e-01 | 100.0% | 66.1% |
| 1c7hA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 36.0 | 3.62e-01 | 87.4% | 52.0% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 38.0 | 3.74e-01 | 92.4% | 53.4% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.64 | 31.0 | 4.05e-01 | 95.0% | 83.1% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 34.0 | 3.16e-01 | 87.4% | 41.9% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 36.0 | 3.57e-01 | 95.0% | 53.5% |
| 2gxfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 34.0 | 3.46e-01 | 99.2% | 53.4% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 35.0 | 3.45e-01 | 100.0% | 50.4% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 36.0 | 3.59e-01 | 91.6% | 56.1% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 32.0 | 4.16e-01 | 95.0% | 89.9% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 36.0 | 3.56e-01 | 92.4% | 55.3% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 36.0 | 3.44e-01 | 95.8% | 49.3% |
| 1ywxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 32.0 | 3.57e-01 | 86.6% | 66.3% |
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 50.0 | 3.72e-01 | 91.6% | 66.3% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 34.0 | 3.45e-01 | 90.8% | 54.7% |
| 3rgaA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 36.0 | 3.53e-01 | 92.4% | 54.9% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 35.0 | 3.53e-01 | 98.3% | 56.8% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 34.0 | 3.29e-01 | 89.1% | 50.0% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 36.0 | 3.46e-01 | 92.4% | 54.5% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 3.48e-01 | 93.3% | 55.7% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 38.0 | 3.63e-01 | 89.1% | 59.1% |
| 4jf8A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 37.0 | 3.47e-01 | 89.9% | 55.6% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 34.0 | 3.16e-01 | 95.8% | 47.1% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 33.0 | 3.36e-01 | 95.8% | 57.7% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 34.0 | 3.42e-01 | 99.2% | 60.3% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.84e-01 | 99.2% | 67.7% |
| 4pc3C02 | 3.30.479.20 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain | 0.53 | 37.0 | 4.17e-01 | 75.6% | 98.8% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 31.0 | 3.46e-01 | 91.6% | 73.6% |
| 3g16B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.30e-01 | 97.5% | 53.9% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.65e-01 | 97.5% | 67.4% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.57e-01 | 100.0% | 66.2% |
| 3rgaA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.38e-01 | 89.1% | 59.5% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 39.0 | 3.19e-01 | 82.4% | 73.4% |
| 1ye9A02 | 2.40.470.10 | Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain | 0.50 | 37.0 | 3.79e-01 | 84.0% | 81.2% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.36e-01 | 96.6% | 62.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3168414 | 4099.1.1.46 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 | 0.83 | 43.0 | 4.30e-01 | 89.1% | 49.6% |
| 3622132 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.74 | 38.0 | 3.62e-01 | 84.0% | 42.9% |
| 3577955 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.74 | 42.0 | 3.16e-01 | 92.4% | 24.4% |
| 3702530 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.72 | 37.0 | 4.21e-01 | 92.4% | 65.6% |
| 3515333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 38.0 | 4.31e-01 | 91.6% | 77.8% |
| 3238560 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 41.0 | 3.81e-01 | 90.8% | 53.8% |
| 3221640 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.60 | 40.0 | 3.77e-01 | 90.8% | 57.1% |
| 3696055 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 37.0 | 3.53e-01 | 92.4% | 52.6% |
| 3960415 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 38.0 | 3.84e-01 | 95.0% | 63.3% |
| 3281242 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.59 | 37.0 | 3.66e-01 | 95.0% | 56.9% |
| 3646327 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 42.0 | 3.79e-01 | 93.3% | 54.4% |
| 4022036 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.59 | 38.0 | 3.27e-01 | 92.4% | 42.1% |
| 3817109 | 243.3.1.26 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 | 0.56 | 37.0 | 3.38e-01 | 96.6% | 50.3% |
| 1688901 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 35.0 | 3.43e-01 | 92.4% | 57.0% |
| 3418966 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.54 | 41.0 | 2.68e-01 | 79.8% | 22.1% |
| 3701306 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.53 | 43.0 | 3.51e-01 | 85.7% | 49.5% |
| 3278632 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.53 | 39.0 | 3.74e-01 | 100.0% | 67.4% |
| 3423894 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.53 | 42.0 | 3.56e-01 | 84.9% | 85.6% |
| 134348 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 38.0 | 3.65e-01 | 97.5% | 67.7% |
| 3725114 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 34.0 | 3.25e-01 | 95.0% | 54.5% |
| 3964308 | 1.1.13.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 | 0.50 | 35.0 | 3.39e-01 | 88.2% | 63.0% |
| 2722861 | 2011.2.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidase_A25 | 0.50 | 36.0 | 2.71e-01 | 74.8% | 81.3% |
| 3530920 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 40.0 | 3.36e-01 | 85.7% | 69.3% |