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replication_associated_protein
Euk-VirFaeces_associated_gemycircularvirus_12
replication_associated_protein__YP_009109715__Faeces_associated_gemycircularvirus_12__1391027
Identity
- Accession:
- YP_009109715 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
70.3
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Genomoviridae›
Gemytondvirus›
Faeces_associated_gemycircularvirus_12
TaxID: 1391027
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-112
Domain cluster:
rep: replication-associated_protein__YP_009552054__Stipagrostis_associaed_virus_Viruses.__X__D4-105
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 49.6 | 5.10e-13 | 100.0% | 91.1% |
D2
high
residues 123-167
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7yugA01 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.82 | 73.0 | 5.40e-01 | 100.0% | 56.6% |
| 7lhsB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.75 | 65.0 | 4.23e-01 | 100.0% | 82.4% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.73 | 56.0 | 4.59e-01 | 97.8% | 43.8% |
| 3cueB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.71 | 51.0 | 3.51e-01 | 80.0% | 76.6% |
| 3iu0A00 | 3.90.1360.10 | Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase | 0.69 | 57.0 | 3.42e-01 | 100.0% | 17.2% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.68 | 56.0 | 4.50e-01 | 97.8% | 49.5% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 55.0 | 3.29e-01 | 97.8% | 16.1% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 55.0 | 4.38e-01 | 100.0% | 71.6% |
| 7yh2B01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.65 | 50.0 | 3.54e-01 | 88.9% | 89.3% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 43.0 | 3.62e-01 | 75.6% | 39.0% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 43.0 | 3.76e-01 | 75.6% | 43.2% |
| 2mbfA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.15e-01 | 100.0% | 59.8% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 3.86e-01 | 97.8% | 46.1% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 40.0 | 3.90e-01 | 73.3% | 60.0% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.57 | 47.0 | 3.24e-01 | 100.0% | 35.7% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.00e-01 | 100.0% | 74.4% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 47.0 | 4.41e-01 | 100.0% | 96.6% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.57 | 43.0 | 3.24e-01 | 95.6% | 82.4% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.56 | 45.0 | 3.61e-01 | 95.6% | 42.6% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.55 | 38.0 | 3.29e-01 | 73.3% | 51.9% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.30e-01 | 88.9% | 47.7% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 4.44e-01 | 100.0% | 100.0% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.52 | 40.0 | 3.04e-01 | 100.0% | 36.8% |
| 2vqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.51 | 39.0 | 2.91e-01 | 100.0% | 33.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3345589 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.76 | 58.0 | 3.78e-01 | 88.9% | 20.0% |
| 4305129 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.75 | 64.0 | 5.42e-01 | 97.8% | 69.3% |
| 4672609 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.75 | 64.0 | 5.48e-01 | 100.0% | 70.7% |
| 5010390 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.75 | 63.0 | 5.17e-01 | 97.8% | 61.2% |
| 3480380 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.74 | 60.0 | 4.63e-01 | 100.0% | 39.1% |
| 3510833 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.74 | 59.0 | 4.44e-01 | 100.0% | 34.4% |
| 4381449 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 64.0 | 5.57e-01 | 100.0% | 75.7% |
| 4284771 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 62.0 | 5.30e-01 | 97.8% | 69.3% |
| 5031505 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.72 | 60.0 | 4.90e-01 | 97.8% | 57.8% |
| 3393633 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.72 | 57.0 | 4.54e-01 | 100.0% | 42.0% |
| 4252854 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.72 | 59.0 | 5.12e-01 | 97.8% | 69.3% |
| 3719708 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 58.0 | 4.44e-01 | 100.0% | 45.2% |
| 3780893 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.70 | 59.0 | 4.56e-01 | 97.8% | 42.0% |
| 3342850 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.70 | 57.0 | 4.89e-01 | 100.0% | 56.0% |
| 5025142 | 6035.1.1.0 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain | 0.69 | 58.0 | 4.94e-01 | 100.0% | 70.0% |
| 4939370 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 53.0 | 4.24e-01 | 97.8% | 53.0% |
| 5000777 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.63 | 50.0 | 4.05e-01 | 93.3% | 47.9% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.61 | 51.0 | 3.89e-01 | 95.6% | 64.5% |
| 4438245 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.61 | 51.0 | 4.13e-01 | 100.0% | 78.9% |
| 3805216 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 51.0 | 3.59e-01 | 100.0% | 29.4% |
| 4544981 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.60 | 48.0 | 4.76e-01 | 100.0% | 96.0% |
| 3008274 | 3796.1.1.1 ↗ | alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker | 0.58 | 46.0 | 4.61e-01 | 93.3% | 100.0% |
| 1284299 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 39.0 | 2.93e-01 | 97.8% | 32.9% |
D3
high
residues 179-366