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replication_associated_protein
Euk-VirGerygone_associated_gemycircularvirus_2
replication_associated_protein__YP_009109729__Gerygone_associated_gemycircularvirus_2__1985382
Identity
- Accession:
- YP_009109729 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
80.0
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Genomoviridae›
Gemycircularvirus›
Gerygone_associated_gemycircularvirus_2
TaxID: 1985382
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-100
Domain cluster:
rep: RepA__YP_009252354__Faeces_associated_gemycircularvirus_20__1843740__D6-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 30.0 | 6.10e-07 | 100.0% | 85.8% |
D2
high
residues 118-157
Domain cluster:
rep: replication_associated_protein__YP_009551401__Lepus_americanus_faeces_associated_genomovirus_SHP7__2219120__D110-157
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 61.0 | 3.56e-01 | 100.0% | 15.9% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 3.99e-01 | 100.0% | 51.0% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 49.0 | 3.31e-01 | 97.5% | 68.6% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 51.0 | 4.23e-01 | 100.0% | 86.3% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.53 | 42.0 | 3.34e-01 | 100.0% | 87.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719708 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 58.0 | 4.30e-01 | 100.0% | 33.9% |
| 5002258 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.65 | 49.0 | 3.99e-01 | 85.0% | 53.8% |
| 3313980 | 101.1.2.252 ↗ | alpha arrays › HTH › HTH › winged helix domain › OHA | 0.64 | 54.0 | 4.23e-01 | 100.0% | 61.1% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.57 | 47.0 | 3.57e-01 | 100.0% | 62.7% |
D3
high
residues 172-330
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283