←Back to structures
replication_associated_protein
Euk-VirGerygone_associated_gemycircularvirus_3
replication_associated_protein__YP_009109733__Gerygone_associated_gemycircularvirus_3__1985383
Identity
- Accession:
- YP_009109733 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Genomoviridae›
Gemycircularvirus›
Gerygone_associated_gemycircularvirus_3
TaxID: 1985383
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 176-339
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
D2
medium
residues 12-107
Domain cluster:
rep: RepA__YP_009252354__Faeces_associated_gemycircularvirus_20__1843740__D6-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 25.9 | 1.20e-05 | 99.0% | 85.0% |
D3
medium
residues 123-163
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.53 | 44.0 | 2.91e-01 | 97.6% | 33.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999169 | 7602.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C | 0.53 | 44.0 | 2.96e-01 | 97.6% | 31.9% |
| 4228018 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.51 | 41.0 | 2.94e-01 | 97.6% | 28.9% |