replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-12_Viruses.

replication_associated_protein__YP_009237518__Lake_Sarah-associated_circular_virus-12_Viruses.__X

Identity

84.8 mean pLDDT

View cluster (107 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-275

PDB

Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	35.1	2.20e-08	77.9%	99.1%

D2 medium residues 2-101

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	50.0	4.10e-13	82.0%	89.0%

D3 medium residues 111-149

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yt3A02	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.70	57.0	4.42e-01	100.0%	50.5%
4ri6A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	38.0	2.92e-01	97.4%	64.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3964818	102.1.1.2 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC	0.67	52.0	4.48e-01	100.0%	66.7%
5072296	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.63	48.0	3.07e-01	87.2%	68.4%