←Back to structures
replication_associated_protein
Euk-VirLake_Sarah-associated_circular_virus-36_Viruses.
replication_associated_protein__YP_009237520__Lake_Sarah-associated_circular_virus-36_Viruses.__X
Identity
- Accession:
- YP_009237520 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
92.7
mean pLDDT
Cluster
View cluster (107 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 161-276
Domain cluster:
rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 34.9 | 2.60e-08 | 75.0% | 99.1% |
D2
medium
residues 5-97
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 69.4 | 3.70e-19 | 92.5% | 96.3% |
D3
medium
residues 108-151
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 54.0 | 5.56e-01 | 100.0% | 97.6% |
| 1oqyA03 | 1.10.10.540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain | 0.69 | 58.0 | 5.38e-01 | 100.0% | 91.4% |
| 2dt7B01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.68 | 54.0 | 5.11e-01 | 100.0% | 89.8% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.66 | 49.0 | 4.97e-01 | 88.6% | 100.0% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 52.0 | 4.64e-01 | 97.7% | 71.2% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 50.0 | 3.50e-01 | 100.0% | 91.9% |
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.61 | 48.0 | 4.58e-01 | 97.7% | 98.2% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 46.0 | 4.60e-01 | 100.0% | 97.7% |
| 2ae0X01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.57 | 44.0 | 3.03e-01 | 90.9% | 55.6% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 45.0 | 4.12e-01 | 93.2% | 75.4% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 40.0 | 3.05e-01 | 95.5% | 51.4% |
| 1vgpA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.53 | 42.0 | 3.41e-01 | 100.0% | 76.0% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.51 | 34.0 | 3.01e-01 | 70.5% | 40.0% |